How to Install and Uninstall r-bioc-gviz Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 06,2024

1. Install "r-bioc-gviz" package

This tutorial shows how to install r-bioc-gviz on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                r-bioc-gviz
            
                    
    
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2. Uninstall "r-bioc-gviz" package

Please follow the step by step instructions below to uninstall r-bioc-gviz on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                r-bioc-gviz
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the r-bioc-gviz package on Ubuntu 21.10 (Impish Indri)

Package: r-bioc-gviz
Architecture: all
Version: 1.34.0+dfsg-1
Priority: optional
Section: universe/gnu-r
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian R Packages Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 7732
Depends: r-base-core (>= 4.0.3-1), r-api-4.0, r-api-bioc-3.12, r-bioc-s4vectors (>= 0.9.25), r-bioc-iranges (>= 1.99.18), r-bioc-genomicranges (>= 1.17.20), r-bioc-xvector (>= 0.5.7), r-bioc-rtracklayer (>= 1.25.13), r-cran-lattice, r-cran-rcolorbrewer, r-bioc-biomart (>= 2.11.0), r-bioc-annotationdbi (>= 1.27.5), r-bioc-biobase (>= 2.15.3), r-bioc-genomicfeatures (>= 1.17.22), r-bioc-ensembldb (>= 2.11.3), r-bioc-bsgenome (>= 1.33.1), r-bioc-biostrings (>= 2.33.11), r-bioc-biovizbase (>= 1.13.8), r-bioc-rsamtools (>= 1.17.28), r-cran-latticeextra (>= 0.6-26), r-cran-matrixstats (>= 0.8.14), r-bioc-genomicalignments (>= 1.1.16), r-bioc-genomeinfodb (>= 1.1.3), r-bioc-biocgenerics (>= 0.11.3), r-cran-digest (>= 0.6.8)
Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-cran-testthat
Filename: pool/universe/r/r-bioc-gviz/r-bioc-gviz_1.34.0+dfsg-1_all.deb
Size: 5402920
MD5sum: dd58c345f04e1a1ca0f176309901e927
SHA1: b88c4def312d74e5cb0500efee52eb5c5aff8b33
SHA256: fd8b66b1c08370501e3ada2b839c91ace32e08a16d95dda68e3891cbe439bac2
SHA512: a8236813886767271e816edad134638960332df5ed8031a8d618406f84fcbfbacc62de99406d94cad35310a98b91072e04cee42d27efeb3e71e50b1233698e7b
Homepage: https://bioconductor.org/packages/Gviz/
Description-en: Plotting data and annotation information along genomic coordinates
Genomic data analyses requires integrated visualization of known
genomic information and new experimental data. Gviz uses the biomaRt and
the rtracklayer packages to perform live annotation queries to Ensembl
and UCSC and translates this to e.g. gene/transcript structures in
viewports of the grid graphics package. This results in genomic
information plotted together with your data.
Description-md5: a1192a0bcb8465ef96fce24dbb9e40c0