How to Install and Uninstall samtools Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 25,2024

1. Install "samtools" package

Here is a brief guide to show you how to install samtools on Ubuntu 21.10 (Impish Indri)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                samtools
            
                    
    
    Copied

2. Uninstall "samtools" package

Please follow the instructions below to uninstall samtools on Ubuntu 21.10 (Impish Indri):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                samtools
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the samtools package on Ubuntu 21.10 (Impish Indri)

Package: samtools
Architecture: amd64
Version: 1.13-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1155
Depends: libc6 (>= 2.34), libhts3 (>= 1.13), libncurses6 (>= 6), libtinfo6 (>= 6), zlib1g (>= 1:1.1.4)
Suggests: cwltool
Breaks: bio-tradis (<= 1.4.5+dfsg-1), iva (<= 1.0.9+ds-6)
Filename: pool/universe/s/samtools/samtools_1.13-2_amd64.deb
Size: 519736
MD5sum: 95d7a066568ade8c8b48d66ae61e8d4d
SHA1: 2936a410357269c62c14673a09e6c0651844ee21
SHA256: 059e5e56c7e5f0253127da3a99f2b00e93a9bcccd3c1b7f0265f21a2169590fc
SHA512: 0018aafdb3e5585c155c225fdd617cfdadd0eef87a80ce047f198990bfbf89220f19f184331c93d0f7145ca02b77992dff50b970df293c356dc74e831a2d6d71
Homepage: https://www.htslib.org/
Description-en: processing sequence alignments in SAM, BAM and CRAM formats
Samtools is a set of utilities that manipulate nucleotide sequence alignments
in the binary BAM format. It imports from and exports to the ascii SAM
(Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing,
and allows one to retrieve reads in any regions swiftly. It is designed to work
on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP
or HTTP server.
Description-md5: 7ede2464ff1fbf70b3103067b7192874