How to Install and Uninstall seer Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 17,2024

1. Install "seer" package

This guide let you learn how to install seer on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                seer
            
                    
    
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2. Uninstall "seer" package

In this section, we are going to explain the necessary steps to uninstall seer on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                seer
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the seer package on Ubuntu 21.10 (Impish Indri)

Package: seer
Architecture: amd64
Version: 1.1.4-5
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 4354
Depends: libarmadillo10 (>= 1:10.1.2+dfsg), libblas3 | libblas.so.3, libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.33), libgcc-s1 (>= 3.3.1), libgzstream0 (>= 1.5+dfsg), libhdf5-103-1, libstdc++6 (>= 9), zlib1g (>= 1:1.1.4), libtext-csv-perl
Suggests: fsm-lite
Filename: pool/universe/s/seer/seer_1.1.4-5_amd64.deb
Size: 1113452
MD5sum: 273a3472310036ad75aa0ae0cf1b75a7
SHA1: 4bff9898600ba96c4ecaa7260d5b0221002893ca
SHA256: 159682d18cc8e49d1c8b762fd2af973cd3b82ec9dca4de26dc8f13c3db698aed
SHA512: 16987776f731c8adf1ad3a324268be64e79d5747a94fd55caea27e76d6f2c6e2806a48c56f89233ccd2b154669d9f9fa8df1d89fb17803eaea2f319ce9b7e18d
Homepage: https://github.com/johnlees/seer
Description-en: genomic sequence element (kmer) enrichment analysis
Bacterial genomes vary extensively in terms of both gene content and
gene sequence - this plasticity hampers the use of traditional SNP-based
methods for identifying all genetic associations with phenotypic
variation. SEER provides a computationally scalable and widely
applicable statistical method for the identification of sequence
elements that are significantly enriched in a phenotype of interest.
SEER is applicable to even tens of thousands of genomes by counting variable-
length k-mers using a distributed string-mining algorithm. Robust
options are provided for association analysis that also correct for the
clonal population structure of bacteria. Using large collections of
genomes of the major human pathogen Streptococcus pneumoniae, SEER
identifies relevant previously characterised resistance determinants for
several antibiotics.
Description-md5: 979255ced90d884824e6cb3db05419ed