How to Install and Uninstall t-coffee Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 04,2024

1. Install "t-coffee" package

This guide covers the steps necessary to install t-coffee on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                t-coffee
            
                    
    
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2. Uninstall "t-coffee" package

Please follow the step by step instructions below to uninstall t-coffee on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                t-coffee
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the t-coffee package on Ubuntu 21.10 (Impish Indri)

Package: t-coffee
Architecture: amd64
Version: 13.41.0.28bdc39+dfsg-4
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 2706
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 4.1.1)
Recommends: amap-align, clustalo, clustalw, dialign-tx, fsa, kalign, libsoap-lite-perl, libxml-simple-perl, mafft, muscle, mustang, ncbi-blast+, poa, prank, probcons, proda, tm-align
Suggests: boxshade, seaview, t-coffee-examples
Filename: pool/universe/t/t-coffee/t-coffee_13.41.0.28bdc39+dfsg-4_amd64.deb
Size: 1002780
MD5sum: dc62959bf3eebfa431f867c207101bf2
SHA1: b6f4d2582674190afb65526125574fb5299b1d83
SHA256: 9548cf7ac9c61fbdf2ef44eb482550a7f495b6335947924982e83686e7b86c02
SHA512: 4ca2e03c96c323068f5f6aa982382504c67b78ee68089818465d2000ca9857b7297cfd29680c2de0b39c3715624fd323b43c04e459465f3a182e1b9123760f05
Homepage: http://www.tcoffee.org/Projects/tcoffee/index.html
Description-en: Multiple Sequence Alignment
T-Coffee is a multiple sequence alignment package. Given a set of
sequences (Proteins or DNA), T-Coffee generates a multiple sequence
alignment. Version 2.00 and higher can mix sequences and structures.
.
T-Coffee allows the combination of a collection of multiple/pairwise,
global or local alignments into a single model. It can also
estimate the level of consistency of each position within the new
alignment with the rest of the alignments. See the pre-print for more
information
.
T-Coffee has a special called M-Coffee that makes it possible to combine the
output of many multiple sequence alignment packages. In its published version,
it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and
T-Coffee. A special version has been made for Debian, DM-Coffee, that uses
only free software by replacing Clustal W by Kalign. Using the 8 Methods of
M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite
methods if you prefer.
Description-md5: d9e3464438ee56699a59a136061af5df