How to Install and Uninstall t-coffee Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: May 17,2024

1. Install "t-coffee" package

This tutorial shows how to install t-coffee on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                t-coffee
            
                    
    
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2. Uninstall "t-coffee" package

This is a short guide on how to uninstall t-coffee on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                t-coffee
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the t-coffee package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: t-coffee
Priority: optional
Section: universe/science
Installed-Size: 2524
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Version: 11.00.8cbe486-2
Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libstdc++6 (>= 4.1.1)
Recommends: amap-align, clustalo, clustalw, dialign-tx, kalign, libsoap-lite-perl, libxml-simple-perl, mafft, muscle, mustang, ncbi-blast+, poa, prank, probcons, proda, tm-align
Suggests: boxshade, seaview, t-coffee-examples, fsa
Filename: pool/universe/t/t-coffee/t-coffee_11.00.8cbe486-2_amd64.deb
Size: 928584
MD5sum: b27cc5370645a2b31b87bb83efdc5fe3
SHA1: d1fa1b39e1949649227dd0cc0d90e77ce297ef37
SHA256: 66b2d1ea7c7101ac39baeb96b3b4eb2ebbcc330e73ec98c9320bc69cb1b12920
Description-en: Multiple Sequence Alignment
T-Coffee is a multiple sequence alignment package. Given a set of
sequences (Proteins or DNA), T-Coffee generates a multiple sequence
alignment. Version 2.00 and higher can mix sequences and structures.
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T-Coffee allows the combination of a collection of multiple/pairwise,
global or local alignments into a single model. It can also
estimate the level of consistency of each position within the new
alignment with the rest of the alignments. See the pre-print for more
information
.
T-Coffee has a special called M-Coffee that makes it possible to combine the
output of many multiple sequence alignment packages. In its published version,
it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and
T-Coffee. A special version has been made for Debian, DM-Coffee, that uses
only free software by replacing Clustal W by Kalign. Using the 8 Methods of
M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite
methods if you prefer.
Description-md5: d9e3464438ee56699a59a136061af5df
Homepage: http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu