How to Install and Uninstall topp Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 16,2024

1. Install "topp" package

This guide let you learn how to install topp on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                topp
            
                    
    
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2. Uninstall "topp" package

Please follow the instructions below to uninstall topp on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                topp
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the topp package on Ubuntu 21.10 (Impish Indri)

Package: topp
Architecture: amd64
Version: 2.6.0+cleaned1-3
Priority: optional
Section: universe/science
Source: openms
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: The Debichem Group
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 17978
Depends: libboost-regex1.74.0-icu67, libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libopenms2.6.0 (= 2.6.0+cleaned1-3), libqt5core5a (>= 5.15.1), libqt5gui5 (>= 5.11.3) | libqt5gui5-gles (>= 5.11.3), libqt5widgets5 (>= 5.11.3), libstdc++6 (>= 9), libxerces-c3.2, openms-common (= 2.6.0+cleaned1-3)
Suggests: openms-doc
Filename: pool/universe/o/openms/topp_2.6.0+cleaned1-3_amd64.deb
Size: 3111632
MD5sum: 2026625c64726b278f2a255fa761338d
SHA1: 32eba4e1a3f4af715490173c4aa31679637e9d4b
SHA256: 17b8534b58d873197bd8a063e24a43437530a626c9df14d41f29db13948ccc0f
SHA512: fd0732a9f79814dea0210538490c67e23cc071f690250919b5d6bbca4cc707dc14cab508869ce012da51f5b8628990419184bb26783906813fdda30a4d79566c
Homepage: http://www.openms.de
Description-en: set of programs implementing The OpenMS Proteomic Pipeline
TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis
of HPLC/MS data. It consists of a set of numerous small applications
that can be chained together to create analysis pipelines tailored
for a specific problem. The applications make use of the libopenms
library. Some examples of these applications are :
.
- TOPPView: A viewer for mass spectrometry data.
- TOPPAS: An assistant for GUI-driven TOPP workflow design.
- DTAExtractor: Extracts spectra of an MS run file to several
files in DTA format.
- FileConverter: Converts between different MS file formats.
- FileFilter: Extracts or manipulates portions of data from peak,
feature or consensus feature files.
- SpectraMerger: Merges spectra from an LC/MS map, either by
precursor or by RT blocks.
- BaselineFilter: Removes the baseline from profile spectra using a
top-hat filter.
- InternalCalibration: Applies an internal calibration.
- PTModel: Trains a model for the prediction of proteotypic
peptides from a training set.
- RTPredict: Predicts retention times for peptides using a model
trained by RTModel.
- ExecutePipeline: Executes workflows created by TOPPAS.
Description-md5: c9ac7e6e045acb8df194c80cfb8f01b4