How to Install and Uninstall toppred Package on Ubuntu 21.10 (Impish Indri)

Last updated: October 05,2024

1. Install "toppred" package

This guide covers the steps necessary to install toppred on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                toppred
            
                    
    
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2. Uninstall "toppred" package

Please follow the instructions below to uninstall toppred on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                toppred
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the toppred package on Ubuntu 21.10 (Impish Indri)

Package: toppred
Architecture: amd64
Version: 1.10-8
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 210
Depends: libc6 (>= 2.29), libgd3 (>= 2.1.0~alpha~)
Filename: pool/universe/t/toppred/toppred_1.10-8_amd64.deb
Size: 41880
MD5sum: 629d28fd819212a85456da24e50da011
SHA1: b076850ec4602f8838f0894e62d8341882e6da0c
SHA256: 34012445411f5aa34c8985ef8c2a9bfb73f983cc2acafbdfa9d693c4e504024d
SHA512: 1c1554e060ac20c5089d4740e603cc1e7cf6dfa662c97ee44cee2576235c8c79963cc357e2f360f38cdc6aab7d03e5fffb6c87f989095ca0430f56c40d3e7a97
Homepage: https://github.com/bioinfo-center-pasteur-fr/toppred
Description-en: transmembrane topology prediction
Toppred is a program to determine the topology of a transmembrane
protein based on G. von Heijne algorithm.
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Each sequence from seq data in fasta format is processed, and toppred
generate the Hydrophobycity profile of the sequence, and the
corresponding hydrophobycities values in the file sequence-ID.hydro.
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Furthermore, the predicted topologies are represented as png images.
Each topology is stored in file sequence-ID-number.png
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The hydrophobicity profile is computed using a window formed by a core
rectangular window of size n, flanked by 2 triangular windows of size q.
NB rectangular and triangular mean that the ponderation values inside
those windows are respectively constant and variable.
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This program is a new implementation of the original toppred program,
based on G. von Heijne algorithm
Description-md5: 3b4bd629fd7f7ff93c878461d8aa9585