How to Install and Uninstall topp Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 26,2024

1. Install "topp" package

Here is a brief guide to show you how to install topp on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                topp
            
                    
    
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2. Uninstall "topp" package

Please follow the guidance below to uninstall topp on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                topp
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the topp package on Ubuntu 20.10 (Groovy Gorilla)

Package: topp
Architecture: amd64
Version: 2.5.0+cleaned1-5build1
Priority: optional
Section: universe/science
Source: openms
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: The Debichem Group
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 19819
Depends: libboost-regex1.71.0-icu67, libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libopenms2.5.0 (= 2.5.0+cleaned1-5build1), libqt5core5a (>= 5.14.1), libqt5gui5 (>= 5.11.3) | libqt5gui5-gles (>= 5.11.3), libqt5widgets5 (>= 5.11.3), libstdc++6 (>= 9), libxerces-c3.2, openms-common (= 2.5.0+cleaned1-5build1)
Suggests: openms-doc
Filename: pool/universe/o/openms/topp_2.5.0+cleaned1-5build1_amd64.deb
Size: 3308096
MD5sum: 17dfdd000c3be17f1c33241f310481ca
SHA1: b48e8932c38aaf89b7b3d01a0c503ca887e05ae9
SHA256: 2d33261030e66e97d3a031c666c012213b31b395e533b302cc1c77466d3cb392
SHA512: 0a2e55272d3c5e6d8270d78c4eed4165959f949a786d53bc1e4868652272feff5aa9e72d948d094515d2e4e1279a7fad2c118fdf33cda9dcff961375983440ba
Homepage: http://www.openms.de
Description-en: set of programs implementing The OpenMS Proteomic Pipeline
TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis
of HPLC/MS data. It consists of a set of numerous small applications
that can be chained together to create analysis pipelines tailored
for a specific problem. The applications make use of the libopenms
library. Some examples of these applications are :
.
- TOPPView: A viewer for mass spectrometry data.
- TOPPAS: An assistant for GUI-driven TOPP workflow design.
- DTAExtractor: Extracts spectra of an MS run file to several
files in DTA format.
- FileConverter: Converts between different MS file formats.
- FileFilter: Extracts or manipulates portions of data from peak,
feature or consensus feature files.
- SpectraMerger: Merges spectra from an LC/MS map, either by
precursor or by RT blocks.
- BaselineFilter: Removes the baseline from profile spectra using a
top-hat filter.
- InternalCalibration: Applies an internal calibration.
- PTModel: Trains a model for the prediction of proteotypic
peptides from a training set.
- RTPredict: Predicts retention times for peptides using a model
trained by RTModel.
- ExecutePipeline: Executes workflows created by TOPPAS.
Description-md5: c9ac7e6e045acb8df194c80cfb8f01b4