How to Install and Uninstall gasic Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: May 18,2024

1. Install "gasic" package

This guide let you learn how to install gasic on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                gasic
            
                    
    
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2. Uninstall "gasic" package

Please follow the guidelines below to uninstall gasic on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                gasic
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the gasic package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: gasic
Priority: optional
Section: universe/science
Installed-Size: 103
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Version: 0.0.r18-3
Depends: python:any (>= 2.6.6-7~), python-scipy, python-numpy, python-biopython, python-pysam, python-matplotlib, bowtie, bowtie2, bwa, seqan-apps
Filename: pool/universe/g/gasic/gasic_0.0.r18-3_amd64.deb
Size: 19970
MD5sum: 34bdd85671292b95e8f9f5947ca08987
SHA1: 2fd59e3376e12aef549cb9c2b699d5622b66cd3f
SHA256: 1dfa84a9a4e9c573c62921954b337e121330c4b301ee8eea188a17105fd6df1f
Description-en: genome abundance similarity correction
One goal of sequencing based metagenomic analysis is the quantitative
taxonomic assessment of microbial community compositions. However, the
majority of approaches either quantify at low resolution (e.g. at phylum
level) or have severe problems discerning highly similar species. Yet,
accurate quantification on species level is desirable in applications
such as metagenomic diagnostics or community comparison. GASiC is a
method to correct read alignment results for the ambiguities imposed by
similarities of genomes. It has superior performance over existing
methods.
Description-md5: bdb1fbe60cfde219955bdb0d4f72e27c
Homepage: http://sourceforge.net/projects/gasic/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu