How to Install and Uninstall gasic Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 23,2024

1. Install "gasic" package

Here is a brief guide to show you how to install gasic on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                gasic
            
                    
    
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2. Uninstall "gasic" package

This guide covers the steps necessary to uninstall gasic on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                gasic
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the gasic package on Ubuntu 21.10 (Impish Indri)

Package: gasic
Architecture: all
Version: 0.0.r19-7
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 81
Depends: python3:any, python3-scipy, python3-numpy, python3-biopython, python3-pysam, python3-matplotlib, bowtie, bowtie2, bwa, seqan-apps
Suggests: gasic-examples
Filename: pool/universe/g/gasic/gasic_0.0.r19-7_all.deb
Size: 21056
MD5sum: 119d8da3a2d4d3f33a6ec67fed124d6d
SHA1: 09694c13669264004d54cf9bc73ffa39ad2b01e5
SHA256: f5f3404538a74dcc0fe4b405e3e2066598d2cd3afd4be64a1b2529eb810d3c37
SHA512: 5cbf9e4c1d35c9ed6e7f4931c33047cbcd554cf56965f312016333fe434db7b3bdf4db6409adcb46a050ba49f6b80c97ba9875f387cbf88e0cfb8f052ff5e43e
Homepage: http://sourceforge.net/projects/gasic/
Description-en: genome abundance similarity correction
One goal of sequencing based metagenomic analysis is the quantitative
taxonomic assessment of microbial community compositions. However, the
majority of approaches either quantify at low resolution (e.g. at phylum
level) or have severe problems discerning highly similar species. Yet,
accurate quantification on species level is desirable in applications
such as metagenomic diagnostics or community comparison. GASiC is a
method to correct read alignment results for the ambiguities imposed by
similarities of genomes. It has superior performance over existing
methods.
Description-md5: bdb1fbe60cfde219955bdb0d4f72e27c