How to Install and Uninstall toppred Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: May 09,2024

1. Install "toppred" package

Learn how to install toppred on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                toppred
            
                    
    
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2. Uninstall "toppred" package

Learn how to uninstall toppred on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                toppred
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the toppred package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: toppred
Priority: optional
Section: universe/science
Installed-Size: 155
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Version: 1.10-1
Depends: libc6 (>= 2.4), libgd3 (>= 2.1.0~alpha~)
Filename: pool/universe/t/toppred/toppred_1.10-1_amd64.deb
Size: 59082
MD5sum: 3745bc0633f279439366e099966266b1
SHA1: a7d8e17c6ee388657c91b71c12f84ba9f9dba880
SHA256: 8a7348aa561dbacb095f4573224125697add7e58efb6b46cdb2bbe1907870bf9
Description-en: transmembrane topology prediction
Toppred is a program to determine the topology of a transmembrane
protein based on G. von Heijne algorithm.
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Each sequence from seq data in fasta format is processed, and toppred
generate the Hydrophobycity profile of the sequence, and the
corresponding hydrophobycities values in the file sequence-ID.hydro.
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Furthermore, the predicted topologies are represented as png images.
Each topology is stored in file sequence-ID-number.png
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The hydrophobicity profile is computed using a window formed by a core
rectangular window of size n, flanked by 2 triangular windows of size q.
NB rectangular and triangular mean that the ponderation values inside
those windows are respectively constant and variable.
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This program is a new implementation of the original toppred program,
based on G. von Heijne algorithm
Description-md5: 3b4bd629fd7f7ff93c878461d8aa9585
Homepage: https://github.com/bioinfo-center-pasteur-fr/toppred
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu