How to Install and Uninstall toppred Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: April 27,2024

1. Install "toppred" package

Please follow the step by step instructions below to install toppred on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                toppred
            
                    
    
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2. Uninstall "toppred" package

Please follow the instructions below to uninstall toppred on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                toppred
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the toppred package on Ubuntu 20.10 (Groovy Gorilla)

Package: toppred
Architecture: amd64
Version: 1.10-7
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 148
Depends: libc6 (>= 2.4), libgd3 (>= 2.1.0~alpha~)
Filename: pool/universe/t/toppred/toppred_1.10-7_amd64.deb
Size: 59552
MD5sum: eb7fa2f543c0bc177d956b9556861b08
SHA1: ccb9e19b97ede1fb24872c97825065e1fae0e8b4
SHA256: f6f09118c69f3e1c5e8359dd4bbba1ee6d532dfa8215971f025e326af8bb10a7
SHA512: 9e6961f72fb386620cab299573b779fece9ba4594f432d0137712295a0608c63ab7a88266359b3f5b795f0440b379dc02d32b876fe25b17207ba5c4a2bbca9c0
Homepage: https://github.com/bioinfo-center-pasteur-fr/toppred
Description-en: transmembrane topology prediction
Toppred is a program to determine the topology of a transmembrane
protein based on G. von Heijne algorithm.
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Each sequence from seq data in fasta format is processed, and toppred
generate the Hydrophobycity profile of the sequence, and the
corresponding hydrophobycities values in the file sequence-ID.hydro.
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Furthermore, the predicted topologies are represented as png images.
Each topology is stored in file sequence-ID-number.png
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The hydrophobicity profile is computed using a window formed by a core
rectangular window of size n, flanked by 2 triangular windows of size q.
NB rectangular and triangular mean that the ponderation values inside
those windows are respectively constant and variable.
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This program is a new implementation of the original toppred program,
based on G. von Heijne algorithm
Description-md5: 3b4bd629fd7f7ff93c878461d8aa9585