How to Install and Uninstall bcbio Package on Kali Linux

Last updated: November 21,2024

Deprecated! Installation of this package may no longer be supported.

1. Install "bcbio" package

Please follow the step by step instructions below to install bcbio on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                bcbio
            
                    
    
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2. Uninstall "bcbio" package

Please follow the instructions below to uninstall bcbio on Kali Linux:


    
        
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                sudo apt remove
            
                        
                bcbio
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the bcbio package on Kali Linux

Package: bcbio
Version: 1.2.9-2
Installed-Size: 285
Maintainer: Debian Med Packaging Team
Architecture: all
Depends: python3:any, python3-bcbio
Recommends: bcftools, bwa, cnvkit, cufflinks, delly, fastqc, freebayes, grabix, libvcflib-tools, macs, pythonpy, rna-star, hisat2, sambamba, samblaster, samtools, salmon, stringtie, subread, tabix, umis, varscan, wget, wham-align
Suggests: toil, cwltool, kallisto, bcbio-doc, qualimap, libglu1-mesa, tophat2, tophat-recondition, r-bioc-summarizedexperiment, r-cran-tidyverse, r-other-wasabi
Size: 77100
SHA256: b9ba11eac0b246af0bf19720af2f000910c02974bb69f5dc106e7cee9f6c070c
SHA1: ef415cdb3dafc4a373fadbd61861f1e105975ed1
MD5sum: c7a7d33c9a475623c9aaac656e89ed53
Description: toolkit for analysing high-throughput sequencing data
This package installs the command line tools of the bcbio-nextgen
toolkit implementing best-practice pipelines for fully automated high
throughput sequencing analysis.
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A high-level configuration file specifies inputs and analysis parameters
to drive a parallel pipeline that handles distributed execution,
idempotent processing restarts and safe transactional steps. The project
contributes a shared community resource that handles the data processing
component of sequencing analysis, providing researchers with more time
to focus on the downstream biology.
.
This package builds and having it in Debian unstable helps the Debian
developers to synchronize their efforts. But unless a series of external
dependencies are not installed manually, the functionality of bcbio in
Debian is only a shadow of itself. Please use the official distribution
of bcbio for the time being, which means "use conda". The TODO file in
the Debian directory should give an overview on progress for Debian
packaging.
Description-md5:
Homepage: https://github.com/bcbio/bcbio-nextgen
Section: contrib/science
Priority: optional
Filename: pool/contrib/b/bcbio/bcbio_1.2.9-2_all.deb