How to Install and Uninstall bcbio Package on Ubuntu 22.04 LTS (Jammy Jellyfish)

Last updated: December 23,2024

Deprecated! Installation of this package may no longer be supported.

You can also install and uninstall the bcbio on the following distributions in the same way, as they are all based on the Ubuntu system

Kubuntu 22.04 LTS
Lubuntu 22.04 LTS
Xubuntu 22.04 LTS
Ubuntu MATE 22.04 LTS
Ubuntu Studio 22.04 LTS
Pop!_OS 22.04 LTS
Zorin OS 16 / Zorin OS 17
Ubuntu Budgie 22.04

1. Install "bcbio" package

This is a short guide on how to install bcbio on Ubuntu 22.04 LTS (Jammy Jellyfish)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                bcbio
            
                    
    
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2. Uninstall "bcbio" package

Please follow the steps below to uninstall bcbio on Ubuntu 22.04 LTS (Jammy Jellyfish):


    
        
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                sudo apt remove
            
                        
                bcbio
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the bcbio package on Ubuntu 22.04 LTS (Jammy Jellyfish)

Package: bcbio
Architecture: all
Version: 1.2.5-1
Priority: optional
Section: multiverse/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 246
Depends: python3:any, python3-bcbio
Recommends: bcftools, cnvkit, cufflinks, delly, fastqc, freebayes, grabix, libvcflib-tools, macs, pythonpy, rna-star, hisat2, sambamba, samblaster, samtools, salmon, stringtie, subread, tabix, umis, varscan, wget, wham-align
Suggests: toil, cwltool, kallisto, bcbio-doc, qualimap, libglu1-mesa, tophat2, tophat-recondition, r-other-wasabi
Filename: pool/multiverse/b/bcbio/bcbio_1.2.5-1_all.deb
Size: 39520
MD5sum: e15f8e6c7daaa3f2ef377725a26ae1f1
SHA1: 1d77b3454db967d78c90061d1164d8341ec3d811
SHA256: 91a935ff0af6748eff722605cdaf47c0bac6cbc458c52fcb628d0a58299b7ae7
SHA512: 67a5f659108201feed6f3d54b1a2140ccadc62929fa0f216d03f9302cd565f9ca23b2a455b6865c301c941d3488d8d5a88d1517b154ec9bb2a2ca12a4de0718a
Homepage: https://github.com/bcbio/bcbio-nextgen
Description-en: toolkit for analysing high-throughput sequencing data
This package installs the command line tools of the bcbio-nextgen
toolkit implementing best-practice pipelines for fully automated high
throughput sequencing analysis.
.
A high-level configuration file specifies inputs and analysis parameters
to drive a parallel pipeline that handles distributed execution,
idempotent processing restarts and safe transactional steps. The project
contributes a shared community resource that handles the data processing
component of sequencing analysis, providing researchers with more time
to focus on the downstream biology.
.
This package builds and having it in Debian unstable helps the Debian
developers to synchronize their efforts. But unless a series of external
dependencies are not installed manually, the functionality of bcbio in
Debian is only a shadow of itself. Please use the official distribution
of bcbio for the time being, which means "use conda". The TODO file in
the Debian directory should give an overview on progress for Debian
packaging.
Description-md5: fc13e378ef411623d1600e8352fa17e5