Complete Guide: Installing bcbio on Ubuntu 20.10 (Groovy Gorilla) 2024

1. Install "bcbio" package

Please follow the guidelines below to install bcbio on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                bcbio
            
                    
    
    Copied

2. Uninstall "bcbio" package

Please follow the guidelines below to uninstall bcbio on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                bcbio
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the bcbio package on Ubuntu 20.10 (Groovy Gorilla)

Package: bcbio
Architecture: all
Version: 1.2.0-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 326
Depends: python3:any, python3-bcbio
Recommends: bcftools, cnvkit, cufflinks, delly, fastqc, freebayes, grabix, libvcflib-tools, macs, pythonpy, rna-star, hisat2, sambamba, samblaster, samtools, salmon, stringtie, subread, tabix, umis, varscan, wget, wham-align
Suggests: toil, cwltool, kallisto, bcbio-doc, qualimap, libglu1-mesa, tophat2, tophat-recondition, r-other-wasabi
Filename: pool/universe/b/bcbio/bcbio_1.2.0-2_all.deb
Size: 128780
MD5sum: 0004da2bcc91621892efb3e8d2c4e162
SHA1: 508811d7726a06009da52c12e46972df5ce12bf1
SHA256: 3dddd33d2929195c1872c0c9245587cfd9703fafafe6575855a7adffe5dadb61
SHA512: 6e44224308fcef47e06740f3cb15b7cbae1f114441211e49a9d11a8dba467a1dde6f82dc2303c7bf2a3582de8463f82900bc43176d9e08817bf5ea9b751e7ec2
Homepage: https://github.com/bcbio/bcbio-nextgen
Description-en: toolkit for analysing high-throughput sequencing data
This package installs the command line tools of the bcbio-nextgen
toolkit implementing best-practice pipelines for fully automated high
throughput sequencing analysis.
.
A high-level configuration file specifies inputs and analysis parameters
to drive a parallel pipeline that handles distributed execution,
idempotent processing restarts and safe transactional steps. The project
contributes a shared community resource that handles the data processing
component of sequencing analysis, providing researchers with more time
to focus on the downstream biology.
Description-md5: c4ab44e2a52bb1c3a4d6a237f7515182