How to Install and Uninstall bcbio Package on Ubuntu 23.10 (Mantic Minotaur)

Last updated: May 02,2024

1. Install "bcbio" package

Please follow the step by step instructions below to install bcbio on Ubuntu 23.10 (Mantic Minotaur)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                bcbio
            
                    
    
    Copied

2. Uninstall "bcbio" package

Here is a brief guide to show you how to uninstall bcbio on Ubuntu 23.10 (Mantic Minotaur):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                bcbio
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the bcbio package on Ubuntu 23.10 (Mantic Minotaur)

Package: bcbio
Architecture: all
Version: 1.2.9-2
Priority: optional
Section: multiverse/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 250
Depends: python3:any, python3-bcbio
Recommends: bcftools, bwa, cnvkit, cufflinks, delly, fastqc, freebayes, grabix, libvcflib-tools, macs, pythonpy, rna-star, hisat2, sambamba, samblaster, samtools, salmon, stringtie, subread, tabix, umis, varscan, wget, wham-align
Suggests: toil, cwltool, kallisto, bcbio-doc, qualimap, libglu1-mesa, tophat2, tophat-recondition, r-bioc-summarizedexperiment, r-cran-tidyverse, r-other-wasabi
Filename: pool/multiverse/b/bcbio/bcbio_1.2.9-2_all.deb
Size: 40908
MD5sum: f6a1cca30fbb86c92ec7e7fefd516488
SHA1: d8ff213e1e96e8e2ac890200bbf4ddad5be4f1bf
SHA256: f2f137d26e0abaf74e76cf1da84962aaeae5825dc3246b0a67a2f826c8ca6e50
SHA512: ff572a6de12914ff6af641b721ed749635032ff19f101e662c3f45c12c776d1a13e1e953c762e3331b5601e7e7c91aa9836dbd9a1817694c6cd29a2ae2e07c99
Homepage: https://github.com/bcbio/bcbio-nextgen
Description: toolkit for analysing high-throughput sequencing data
Description-md5: fc13e378ef411623d1600e8352fa17e5