How to Install and Uninstall hisat2 Package on Kali Linux

Last updated: November 22,2024

1. Install "hisat2" package

This tutorial shows how to install hisat2 on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                hisat2
            
                    
    
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2. Uninstall "hisat2" package

This guide let you learn how to uninstall hisat2 on Kali Linux:


    
        
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                sudo apt remove
            
                        
                hisat2
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the hisat2 package on Kali Linux

Package: hisat2
Source: hisat2 (2.2.1-4)
Version: 2.2.1-4+b3
Installed-Size: 14302
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1), perl:any, python3
Recommends: python3-hisat2, bcftools, samtools
Size: 3699976
SHA256: c2a8ca5efa43dacd350379b05a14539cb1cf552bed2ebc098bb36575eead30b2
SHA1: 3eab4c762fd20564d43e5eb1fd8115acf31cab7c
MD5sum: db17b1a9f183db41914de8c2a6740be3
Description: graph-based alignment of short nucleotide reads to many genomes
HISAT2 is a fast and sensitive alignment program for mapping next-generation
sequencing reads (both DNA and RNA) to a population of human genomes (as well
as against a single reference genome). Based on an extension of BWT for graphs
a graph FM index (GFM) was designed and implementd. In addition to using
one global GFM index that represents a population of human genomes, HISAT2
uses a large set of small GFM indexes that collectively cover the whole genome
(each index representing a genomic region of 56 Kbp, with 55,000 indexes
needed to cover the human population). These small indexes (called local
indexes), combined with several alignment strategies, enable rapid and
accurate alignment of sequencing reads. This new indexing scheme is called a
Hierarchical Graph FM index (HGFM).
Description-md5:
Homepage: https://daehwankimlab.github.io/hisat2/
Built-Using: simde (= 0.7.6-1)
Section: science
Priority: optional
Filename: pool/main/h/hisat2/hisat2_2.2.1-4+b3_amd64.deb