How to Install and Uninstall hisat2 Package on Ubuntu 22.04 LTS (Jammy Jellyfish)

Last updated: November 22,2024

You can also install and uninstall the hisat2 on the following distributions in the same way, as they are all based on the Ubuntu system

Kubuntu 22.04 LTS
Lubuntu 22.04 LTS
Xubuntu 22.04 LTS
Ubuntu MATE 22.04 LTS
Ubuntu Studio 22.04 LTS
Pop!_OS 22.04 LTS
Zorin OS 16 / Zorin OS 17
Ubuntu Budgie 22.04

1. Install "hisat2" package

Please follow the guidance below to install hisat2 on Ubuntu 22.04 LTS (Jammy Jellyfish)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                hisat2
            
                    
    
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2. Uninstall "hisat2" package

This guide covers the steps necessary to uninstall hisat2 on Ubuntu 22.04 LTS (Jammy Jellyfish):


    
        
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                sudo apt remove
            
                        
                hisat2
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the hisat2 package on Ubuntu 22.04 LTS (Jammy Jellyfish)

Package: hisat2
Architecture: amd64
Version: 2.2.1-3
Built-Using: simde (= 0.7.2-4)
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 12081
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 11), perl:any, python3
Recommends: python3-hisat2, bcftools, samtools
Filename: pool/universe/h/hisat2/hisat2_2.2.1-3_amd64.deb
Size: 3832098
MD5sum: c12068d2bb6d7816b0a576d65060b2bc
SHA1: 0a8f48e81e3df8d8ae402627fd9cf4201e3bbddb
SHA256: 4a4c1a7ebfe6cb5114d4028d11533f7c2538e064a08b6fee383b7ebf957e2892
SHA512: 8fb4d520f80e02c1b66bd55d34a2e3edb0224f1d8bf634ffc92dba8eb57332f567710c4598663441e44c45bdc0d797bbf7567f2ff0cd6ff2a943c95ed07ac0fe
Homepage: https://daehwankimlab.github.io/hisat2/
Description: graph-based alignment of short nucleotide reads to many genomes
Description-md5: 5f7b7bae1f6d1899a67fb91260ec0d0f