How to Install and Uninstall kaptive-example Package on Kali Linux

Last updated: November 26,2024

1. Install "kaptive-example" package

This guide covers the steps necessary to install kaptive-example on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                kaptive-example
            
                    
    
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2. Uninstall "kaptive-example" package

Please follow the instructions below to uninstall kaptive-example on Kali Linux:


    
        
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                sudo apt remove
            
                        
                kaptive-example
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the kaptive-example package on Kali Linux

Package: kaptive-example
Source: kaptive
Version: 2.0.8-1
Installed-Size: 6328
Maintainer: Debian Med Packaging Team
Architecture: all
Enhances: kaptive
Size: 6474452
SHA256: 08d6a63f99b2b48f6795843560fffcf60cbb98a504da8bcc3eb9a03441dd719c
SHA1: aa3e6264037c942d0d468ce7d4fbdcf06545a855
MD5sum: fb1c7a1c882c7cc541ad8934ec136be9
Description: example data for kaptive for Klebsiella genome assemblies
Kaptive reports information about K and O types for Klebsiella genome
assemblies.
.
Given a novel genome and a database of known loci (K or O), Kaptive will
help a user to decide whether their sample has a known or novel locus.
It carries out the following for each input assembly:
.
* BLAST for all known locus nucleotide sequences (using blastn) to
identify the best match ('best' defined as having the highest
coverage).
* Extract the region(s) of the assembly which correspond to the BLAST
hits (i.e. the locus sequence in the assembly) and save it to a
FASTA file.
* BLAST for all known locus genes (using tblastn) to identify which
expected genes (genes in the best matching locus) are present/missing
and whether any unexpected genes (genes from other loci) are present.
* Output a summary to a table file.
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In cases where your input assembly closely matches a known locus,
Kaptive should make that obvious. When your assembly has a novel type,
that too should be clear. However, Kaptive cannot reliably extract or
annotate locus sequences for totally novel types - if it indicates a
novel locus is present then extracting and annotating the sequence is up
to you! Very poor assemblies can confound the results, so be sure to
closely examine any case where the locus sequence in your assembly is
broken into multiple pieces.
.
This package contains some example data.
Description-md5:
Multi-Arch: foreign
Homepage: https://github.com/katholt/Kaptive
Section: science
Priority: optional
Filename: pool/main/k/kaptive/kaptive-example_2.0.8-1_all.deb