How to Install and Uninstall kaptive-example Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: May 15,2024

1. Install "kaptive-example" package

Please follow the steps below to install kaptive-example on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                kaptive-example
            
                    
    
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2. Uninstall "kaptive-example" package

Here is a brief guide to show you how to uninstall kaptive-example on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                kaptive-example
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the kaptive-example package on Ubuntu 20.10 (Groovy Gorilla)

Package: kaptive-example
Architecture: all
Version: 0.7.0-2
Priority: optional
Section: universe/science
Source: kaptive
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 6327
Enhances: kaptive
Filename: pool/universe/k/kaptive/kaptive-example_0.7.0-2_all.deb
Size: 6473152
MD5sum: 3dde192979de92b3c0c84dae4442bf97
SHA1: 43c3cac92beada2efd34958d5af7ce374f6f668b
SHA256: 9bf8af86a8ef800eabb4f9df8e062e4b87307a17c50ca65c5f42ed1bbc55712e
SHA512: 579bdd73350878fc259ec8c122bb5014223e33c0c6e8c9f62d1575ae229075c9a41f84b6eb26f6933ca8087388fd3f3e138ad76536b5e94ffc60699c9c64bcae
Homepage: https://github.com/katholt/Kaptive
Description-en: example data for kaptive for Klebsiella genome assemblies
Kaptive reports information about K and O types for Klebsiella genome
assemblies.
.
Given a novel genome and a database of known loci (K or O), Kaptive will
help a user to decide whether their sample has a known or novel locus.
It carries out the following for each input assembly:
.
* BLAST for all known locus nucleotide sequences (using blastn) to
identify the best match ('best' defined as having the highest
coverage).
* Extract the region(s) of the assembly which correspond to the BLAST
hits (i.e. the locus sequence in the assembly) and save it to a
FASTA file.
* BLAST for all known locus genes (using tblastn) to identify which
expected genes (genes in the best matching locus) are present/missing
and whether any unexpected genes (genes from other loci) are present.
* Output a summary to a table file.
.
In cases where your input assembly closely matches a known locus,
Kaptive should make that obvious. When your assembly has a novel type,
that too should be clear. However, Kaptive cannot reliably extract or
annotate locus sequences for totally novel types - if it indicates a
novel locus is present then extracting and annotating the sequence is up
to you! Very poor assemblies can confound the results, so be sure to
closely examine any case where the locus sequence in your assembly is
broken into multiple pieces.
.
This package contains some example data.
Description-md5: a3a7f5f174faf1a4cc54bc527349a2ee