How to Install and Uninstall kaptive-example Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 19,2024

1. Install "kaptive-example" package

Please follow the steps below to install kaptive-example on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                kaptive-example
            
                    
    
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2. Uninstall "kaptive-example" package

In this section, we are going to explain the necessary steps to uninstall kaptive-example on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                kaptive-example
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the kaptive-example package on Ubuntu 21.10 (Impish Indri)

Package: kaptive-example
Architecture: all
Version: 0.7.3-3
Priority: optional
Section: universe/science
Source: kaptive
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 6327
Enhances: kaptive
Filename: pool/universe/k/kaptive/kaptive-example_0.7.3-3_all.deb
Size: 6473704
MD5sum: d41c6c49481b2dc6143d3c0b3b4c0da5
SHA1: 0610d4dbf32d6390f49cef725c340ac142e4e8a1
SHA256: df1b879b4fb0bf1433c30516aa1377a39c393c5e63908f7bf22ffcf3f7f81147
SHA512: a53cb618b2b42cac94f6296747a02ea79312d879a3175322fff67bb3da6b53691af41259e90770d1c075d0aa03e8da667b72d67bdc0212b12f3c7f9d7e0adeb5
Homepage: https://github.com/katholt/Kaptive
Description-en: example data for kaptive for Klebsiella genome assemblies
Kaptive reports information about K and O types for Klebsiella genome
assemblies.
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Given a novel genome and a database of known loci (K or O), Kaptive will
help a user to decide whether their sample has a known or novel locus.
It carries out the following for each input assembly:
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* BLAST for all known locus nucleotide sequences (using blastn) to
identify the best match ('best' defined as having the highest
coverage).
* Extract the region(s) of the assembly which correspond to the BLAST
hits (i.e. the locus sequence in the assembly) and save it to a
FASTA file.
* BLAST for all known locus genes (using tblastn) to identify which
expected genes (genes in the best matching locus) are present/missing
and whether any unexpected genes (genes from other loci) are present.
* Output a summary to a table file.
.
In cases where your input assembly closely matches a known locus,
Kaptive should make that obvious. When your assembly has a novel type,
that too should be clear. However, Kaptive cannot reliably extract or
annotate locus sequences for totally novel types - if it indicates a
novel locus is present then extracting and annotating the sequence is up
to you! Very poor assemblies can confound the results, so be sure to
closely examine any case where the locus sequence in your assembly is
broken into multiple pieces.
.
This package contains some example data.
Description-md5: a3a7f5f174faf1a4cc54bc527349a2ee