How to Install and Uninstall kaptive-example Package on Ubuntu 21.04 (Hirsute Hippo)

Last updated: May 19,2024

1. Install "kaptive-example" package

Here is a brief guide to show you how to install kaptive-example on Ubuntu 21.04 (Hirsute Hippo)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                kaptive-example
            
                    
    
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2. Uninstall "kaptive-example" package

Please follow the step by step instructions below to uninstall kaptive-example on Ubuntu 21.04 (Hirsute Hippo):


    
        
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                sudo apt remove
            
                        
                kaptive-example
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the kaptive-example package on Ubuntu 21.04 (Hirsute Hippo)

Package: kaptive-example
Architecture: all
Version: 0.7.3-1
Priority: optional
Section: universe/science
Source: kaptive
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 6327
Enhances: kaptive
Filename: pool/universe/k/kaptive/kaptive-example_0.7.3-1_all.deb
Size: 6473416
MD5sum: 98b952544d384d8958e8c7e2ab7a30d2
SHA1: 661c34346bb3a93017986c6417deadda6eac2653
SHA256: 03696d8e09e6d83a1af7883a229e7ce8ae807e364b61186288b069d58747611e
SHA512: 1ef1f6bc7baa002db88735b4ac1fd9683e0df22857cc5fcb150efd344bfcbc681a5f4010451b82dbb6aabcf3547b07007ba60469b4dfe30764c5585d0908c5ac
Homepage: https://github.com/katholt/Kaptive
Description-en: example data for kaptive for Klebsiella genome assemblies
Kaptive reports information about K and O types for Klebsiella genome
assemblies.
.
Given a novel genome and a database of known loci (K or O), Kaptive will
help a user to decide whether their sample has a known or novel locus.
It carries out the following for each input assembly:
.
* BLAST for all known locus nucleotide sequences (using blastn) to
identify the best match ('best' defined as having the highest
coverage).
* Extract the region(s) of the assembly which correspond to the BLAST
hits (i.e. the locus sequence in the assembly) and save it to a
FASTA file.
* BLAST for all known locus genes (using tblastn) to identify which
expected genes (genes in the best matching locus) are present/missing
and whether any unexpected genes (genes from other loci) are present.
* Output a summary to a table file.
.
In cases where your input assembly closely matches a known locus,
Kaptive should make that obvious. When your assembly has a novel type,
that too should be clear. However, Kaptive cannot reliably extract or
annotate locus sequences for totally novel types - if it indicates a
novel locus is present then extracting and annotating the sequence is up
to you! Very poor assemblies can confound the results, so be sure to
closely examine any case where the locus sequence in your assembly is
broken into multiple pieces.
.
This package contains some example data.
Description-md5: a3a7f5f174faf1a4cc54bc527349a2ee