How to Install and Uninstall mosdepth Package on Kali Linux

Last updated: May 04,2024

1. Install "mosdepth" package

Please follow the steps below to install mosdepth on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                mosdepth
            
                    
    
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2. Uninstall "mosdepth" package

Please follow the guidelines below to uninstall mosdepth on Kali Linux:


    
        
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                sudo apt remove
            
                        
                mosdepth
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the mosdepth package on Kali Linux

Package: mosdepth
Version: 0.3.6+ds-1
Installed-Size: 585
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.34), libhts-dev
Size: 170400
SHA256: 5a2705114ca9a4f934d77b3a1274c2147657fc9040311c119c9f5893c7988a74
SHA1: 8fdba2a4a423c3ab1620944ef4c2070897550b6d
MD5sum: 426c80734d552c5fd8debdc27bbec961
Description: BAM/CRAM depth calculation biological sequencing
Many small reads are produced by high-throughput "next generation"
sequencing technologies. The final sequence is derived from how
these reads are overlapping towards a consensus.
The more reads are covering/confirming parts of a nucleotide seq,
the higher the confidence is. Too many reads would be indicative
of e.g. repeats in the genome.
.
mosdepth can output:
* per-base depth about 2x as fast samtools depth--about 25 minutes
of CPU time for a 30X genome.
* mean per-window depth given a window size--as would be used for
CNV calling.
* the mean per-region given a BED file of regions.
* a distribution of proportion of bases covered at or above a given
threshold for each chromosome and genome-wide.
* quantized output that merges adjacent bases as long as they fall
in the same coverage bins e.g. (10-20)
* threshold output to indicate how many bases in each region are
covered at the given thresholds.
when appropriate, the output files are bgzipped and indexed for ease
of use.
Description-md5:
Homepage: https://github.com/brentp/mosdepth
Section: science
Priority: optional
Filename: pool/main/m/mosdepth/mosdepth_0.3.6+ds-1_amd64.deb