Complete Guide: Installing mosdepth on Ubuntu 21.10 (Impish Indri) 2024

1. Install "mosdepth" package

This is a short guide on how to install mosdepth on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                mosdepth
            
                    
    
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2. Uninstall "mosdepth" package

Please follow the guidelines below to uninstall mosdepth on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                mosdepth
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the mosdepth package on Ubuntu 21.10 (Impish Indri)

Package: mosdepth
Architecture: amd64
Version: 0.3.1+ds-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 546
Depends: libc6 (>= 2.34)
Filename: pool/universe/m/mosdepth/mosdepth_0.3.1+ds-3_amd64.deb
Size: 171236
MD5sum: f9676de6dd45d0736eb4990774e036b9
SHA1: ff14661a93e886cff2147d3b5b5ad81886059fcf
SHA256: 33bcbc40c0d9cfcb14424a4b54d73a1dc87a08d2b5763ccd02a8238893bbf82f
SHA512: 533558ebaa0914a8849fccb67ee95db3a36539d74ac2eafcefbd359e5fada2be610e5d38091ab641b4604f6bbb855296a69cacbb410fd0604689b71283e25e71
Homepage: https://github.com/brentp/mosdepth
Description-en: BAM/CRAM depth calculation biological sequencing
Many small reads are produced by high-throughput "next generation"
sequencing technologies. The final sequence is derived from how
these reads are overlapping towards a consensus.
The more reads are covering/confirming parts of a nucleotide seq,
the higher the confidence is. Too many reads would be indicative
of e.g. repeats in the genome.
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mosdepth can output:
* per-base depth about 2x as fast samtools depth--about 25 minutes
of CPU time for a 30X genome.
* mean per-window depth given a window size--as would be used for
CNV calling.
* the mean per-region given a BED file of regions.
* a distribution of proportion of bases covered at or above a given
threshold for each chromosome and genome-wide.
* quantized output that merges adjacent bases as long as they fall
in the same coverage bins e.g. (10-20)
* threshold output to indicate how many bases in each region are
covered at the given thresholds.
when appropriate, the output files are bgzipped and indexed for ease
of use.
Description-md5: cc7a54f39fbeb84b9d2a7b602a4a0101