How to Install and Uninstall mosdepth Package on Ubuntu 22.04 LTS (Jammy Jellyfish)

Last updated: May 09,2024

Deprecated! Installation of this package may no longer be supported.

You can also install and uninstall the mosdepth on the following distributions in the same way, as they are all based on the Ubuntu system

Kubuntu 22.04 LTS
Lubuntu 22.04 LTS
Xubuntu 22.04 LTS
Ubuntu MATE 22.04 LTS
Ubuntu Studio 22.04 LTS
Pop!_OS 22.04 LTS
Zorin OS 16 / Zorin OS 17
Ubuntu Budgie 22.04

1. Install "mosdepth" package

This tutorial shows how to install mosdepth on Ubuntu 22.04 LTS (Jammy Jellyfish)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                mosdepth
            
                    
    
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2. Uninstall "mosdepth" package

This guide let you learn how to uninstall mosdepth on Ubuntu 22.04 LTS (Jammy Jellyfish):


    
        
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                sudo apt remove
            
                        
                mosdepth
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the mosdepth package on Ubuntu 22.04 LTS (Jammy Jellyfish)

Package: mosdepth
Architecture: amd64
Version: 0.3.2+ds-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 546
Depends: libc6 (>= 2.34)
Filename: pool/universe/m/mosdepth/mosdepth_0.3.2+ds-1_amd64.deb
Size: 171928
MD5sum: cdd4646b4de0f513a9937dc4a1f719a2
SHA1: ba91711ea049170269c0bc5d70adbfcd3aa943d5
SHA256: da0d9b5bb270220626e5f19dd3e949842851546576087e075b71631637974742
SHA512: 604706e94f65c5fa7be0266b6d1245889d45a0bf59344f6edae19115dac90468587f43f9c08395cfdb07bc0e40f270f58d0d5d0985da1fec7291fbad91311120
Homepage: https://github.com/brentp/mosdepth
Description-en: BAM/CRAM depth calculation biological sequencing
Many small reads are produced by high-throughput "next generation"
sequencing technologies. The final sequence is derived from how
these reads are overlapping towards a consensus.
The more reads are covering/confirming parts of a nucleotide seq,
the higher the confidence is. Too many reads would be indicative
of e.g. repeats in the genome.
.
mosdepth can output:
* per-base depth about 2x as fast samtools depth--about 25 minutes
of CPU time for a 30X genome.
* mean per-window depth given a window size--as would be used for
CNV calling.
* the mean per-region given a BED file of regions.
* a distribution of proportion of bases covered at or above a given
threshold for each chromosome and genome-wide.
* quantized output that merges adjacent bases as long as they fall
in the same coverage bins e.g. (10-20)
* threshold output to indicate how many bases in each region are
covered at the given thresholds.
when appropriate, the output files are bgzipped and indexed for ease
of use.
Description-md5: cc7a54f39fbeb84b9d2a7b602a4a0101