How to Install and Uninstall gmap Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: May 10,2024

1. Install "gmap" package

Please follow the guidelines below to install gmap on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                gmap
            
                    
    
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2. Uninstall "gmap" package

This tutorial shows how to uninstall gmap on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                gmap
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the gmap package on Ubuntu 20.10 (Groovy Gorilla)

Package: gmap
Architecture: amd64
Version: 2020-06-30+ds-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 86215
Depends: perl:any, libbz2-1.0, libc6 (>= 2.29), zlib1g (>= 1:1.2.6)
Filename: pool/universe/g/gmap/gmap_2020-06-30+ds-1_amd64.deb
Size: 11180504
MD5sum: 0b0a9a84db743a5c4d139679fce5a98c
SHA1: ef0678506b3c4e679b636f0c41d4ac5108fbd011
SHA256: 6203afce5ce20156300d018bcac0c6aa0cb704e76ad4098a685a68c92a98e410
SHA512: 1e0a6fd687c8100dcca0dfcdaaa330a6c2d1fdd0c1fa429c8cc2217ee57d296d000c7d3a3d96f4f33df05e9449679f255ebb4353d771b6291b6a4146171f6186
Homepage: http://research-pub.gene.com/gmap
Description-en: spliced and SNP-tolerant alignment for mRNA and short reads
This package contains the programs GMAP and GSNAP as well as
utilities to manage genome databases in GMAP/GSNAP format.
GMAP (Genomic Mapping and Alignment Program) is a tool for aligning
EST, mRNA and cDNA sequences.
GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for
aligning single-end and paired-end transcriptome reads.
Both tools can use a database of
* known splice sites and identify novel splice sites.
* known single-nucleotide polymorphisms (SNPs).
GSNAP can align bisulfite-treated DNA.
Description-md5: d1daaf58e59d1f735c184407a7d778b3