How to Install and Uninstall gmap Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 10,2024

1. Install "gmap" package

Here is a brief guide to show you how to install gmap on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                gmap
            
                    
    
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2. Uninstall "gmap" package

This is a short guide on how to uninstall gmap on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                gmap
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the gmap package on Ubuntu 21.10 (Impish Indri)

Package: gmap
Architecture: amd64
Version: 2021-02-22+ds-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 67007
Depends: perl:any, libbz2-1.0, libc6 (>= 2.33), zlib1g (>= 1:1.2.6)
Filename: pool/universe/g/gmap/gmap_2021-02-22+ds-1_amd64.deb
Size: 6491568
MD5sum: dbede4b235884539dd08ef1cfecda4ab
SHA1: 6a55481ca5c578627133dbdfae7a27f434f7e174
SHA256: c061a0763b139348aad3da0f51443a12f6a42c57a04806c93202e3cea2c82d7e
SHA512: 373ed07e3960aab85def1306388a41278ceef6ee941eb33b080bde2f7f8ed5d330b5e1b40798f0d1eec564a2fa64f4ba1f141b6ecae54f0380f1872792affaf1
Homepage: http://research-pub.gene.com/gmap
Description-en: spliced and SNP-tolerant alignment for mRNA and short reads
This package contains the programs GMAP and GSNAP as well as
utilities to manage genome databases in GMAP/GSNAP format.
GMAP (Genomic Mapping and Alignment Program) is a tool for aligning
EST, mRNA and cDNA sequences.
GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for
aligning single-end and paired-end transcriptome reads.
Both tools can use a database of
* known splice sites and identify novel splice sites.
* known single-nucleotide polymorphisms (SNPs).
GSNAP can align bisulfite-treated DNA.
Description-md5: d1daaf58e59d1f735c184407a7d778b3