How to Install and Uninstall gmap Package on Ubuntu 21.04 (Hirsute Hippo)

Last updated: November 07,2024

1. Install "gmap" package

Learn how to install gmap on Ubuntu 21.04 (Hirsute Hippo)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                gmap
            
                    
    
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2. Uninstall "gmap" package

This is a short guide on how to uninstall gmap on Ubuntu 21.04 (Hirsute Hippo):


    
        
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                sudo apt remove
            
                        
                gmap
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the gmap package on Ubuntu 21.04 (Hirsute Hippo)

Package: gmap
Architecture: amd64
Version: 2021-02-12+ds-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 86395
Depends: perl:any, libbz2-1.0, libc6 (>= 2.33), zlib1g (>= 1:1.2.6)
Filename: pool/universe/g/gmap/gmap_2021-02-12+ds-1_amd64.deb
Size: 11259120
MD5sum: 2526e5d78a31782f35e65a0088430203
SHA1: f450e606ef067d16af5b0a128424c4b624323e82
SHA256: 2221763e0662dc119572ae1e6a8b2ce495911205a67bf6c92efa4d9bd039f783
SHA512: a7b2189ca8f621051df13961da2b5c8fca3a315bdc17ccf1c510056eab62950172f376c0f9ff62a6feb83b8d3faa2e45d730ae65032d2ccb9a5993aa447816ae
Homepage: http://research-pub.gene.com/gmap
Description-en: spliced and SNP-tolerant alignment for mRNA and short reads
This package contains the programs GMAP and GSNAP as well as
utilities to manage genome databases in GMAP/GSNAP format.
GMAP (Genomic Mapping and Alignment Program) is a tool for aligning
EST, mRNA and cDNA sequences.
GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for
aligning single-end and paired-end transcriptome reads.
Both tools can use a database of
* known splice sites and identify novel splice sites.
* known single-nucleotide polymorphisms (SNPs).
GSNAP can align bisulfite-treated DNA.
Description-md5: d1daaf58e59d1f735c184407a7d778b3