How to Install and Uninstall hhsuite Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 22,2024

1. Install "hhsuite" package

Please follow the steps below to install hhsuite on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                hhsuite
            
                    
    
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2. Uninstall "hhsuite" package

Please follow the step by step instructions below to uninstall hhsuite on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                hhsuite
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the hhsuite package on Ubuntu 20.10 (Groovy Gorilla)

Package: hhsuite
Architecture: amd64
Version: 3.2.0-3
Priority: extra
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 77213
Depends: libc6 (>= 2.29), libffindex0 (>= 0.9.9.9), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 9), perl:any, ffindex (>= 0.9.9.8), hhsuite-data (= 3.2.0-3), python3
Filename: pool/universe/h/hhsuite/hhsuite_3.2.0-3_amd64.deb
Size: 10480700
MD5sum: e4c380b5a1e080a4c1e60d3b5958bbe9
SHA1: 28b2a7929672494581313f2c8e9f7e712542c828
SHA256: 6bd6bc9e2649943859cac2444874952e67b6b9d32602939ae210eaa2da86951b
SHA512: 5d3ddc3cf27f3bf3e3d2ec06e08855b7474e2a88cde3fb590befd9d2e342ee569d9803f44bb86a077f028812a475f70417cbbd32fce5bed642fdec83501a5646
Homepage: https://toolkit.tuebingen.mpg.de/
Description-en: sensitive protein sequence searching based on HMM-HMM alignment
HH-suite is an open-source software package for sensitive protein sequence
searching based on the pairwise alignment of hidden Markov models (HMMs).
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This package contains HHsearch and HHblits among other programs and utilities.
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HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM
and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous
proteins. HHsearch is often used for protein structure prediction to detect
homologous templates and to build highly accurate query-template pairwise
alignments for homology modeling.
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HHblits can build high-quality MSAs starting from single sequences or from
MSAs. It transforms these into a query HMM and, using an iterative search
strategy, adds significantly similar sequences from the previous search to
the updated query HMM for the next search iteration. Compared to PSI-BLAST,
HHblits is faster, up to twice as sensitive and produces more accurate
alignments.
Description-md5: 33cb7e8c769908e574aec96cb70eb73a