How to Install and Uninstall hhsuite Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: November 26,2024

1. Install "hhsuite" package

In this section, we are going to explain the necessary steps to install hhsuite on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                hhsuite
            
                    
    
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2. Uninstall "hhsuite" package

In this section, we are going to explain the necessary steps to uninstall hhsuite on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                hhsuite
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the hhsuite package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: hhsuite
Priority: extra
Section: universe/science
Installed-Size: 2733
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Version: 2.0.16-6
Depends: libc6 (>= 2.14), libffindex0, libgcc1 (>= 1:4.1.1), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), ffindex (>= 0.9.6.1), hhsuite-data (= 2.0.16-6)
Breaks: hhsuite-data (<= 2.0.16-1)
Filename: pool/universe/h/hhsuite/hhsuite_2.0.16-6_amd64.deb
Size: 729976
MD5sum: 7abc4451eb9c47e4cab01e27c39c91d4
SHA1: ab655472bef757f5e2dc5a69d05a197030bc798a
SHA256: eded9b6c3918b4a49bb190796f89d39d73342cb98d680e9947320677bebca485
Description-en: sensitive protein sequence searching based on HMM-HMM alignment
HH-suite is an open-source software package for sensitive protein sequence
searching based on the pairwise alignment of hidden Markov models (HMMs).
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This package contains HHsearch and HHblits among other programs and utilities.
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HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM
and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous
proteins. HHsearch is often used for protein structure prediction to detect
homologous templates and to build highly accurate query-template pairwise
alignments for homology modeling.
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HHblits can build high-quality MSAs starting from single sequences or from
MSAs. It transforms these into a query HMM and, using an iterative search
strategy, adds significantly similar sequences from the previous search to
the updated query HMM for the next search iteration. Compared to PSI-BLAST,
HHblits is faster, up to twice as sensitive and produces more accurate
alignments.
Description-md5: 33cb7e8c769908e574aec96cb70eb73a
Homepage: http://toolkit.genzentrum.lmu.de/sections/search
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu