How to Install and Uninstall hhsuite Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 19,2024

1. Install "hhsuite" package

This tutorial shows how to install hhsuite on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                hhsuite
            
                    
    
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2. Uninstall "hhsuite" package

Here is a brief guide to show you how to uninstall hhsuite on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                hhsuite
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the hhsuite package on Ubuntu 21.10 (Impish Indri)

Package: hhsuite
Architecture: amd64
Version: 3.3.0+ds-4
Built-Using: simde (= 0.6.0-3)
Priority: extra
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 463795
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 9), perl:any, hhsuite-data (= 3.3.0+ds-4), python3
Conflicts: ffindex
Filename: pool/universe/h/hhsuite/hhsuite_3.3.0+ds-4_amd64.deb
Size: 54920036
MD5sum: 6dcab3595a0c87ff86459d60425add4a
SHA1: 72c699eee48342a739857020f91ec32469ed48a4
SHA256: 3a073544610605dbe1629fdf4b6810da1707dd2534f925c94788f0eba974262f
SHA512: 45d680fef41ef7e9ca112feef5f9e93a0722d600279d7fc5be22cce4ba5246fbc96983a12f8bee2cb307e6e51a77d0fd547c8b5eb5ab3b99be41cc721b9a3494
Homepage: https://toolkit.tuebingen.mpg.de/
Description-en: sensitive protein sequence searching based on HMM-HMM alignment
HH-suite is an open-source software package for sensitive protein sequence
searching based on the pairwise alignment of hidden Markov models (HMMs).
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This package contains HHsearch and HHblits among other programs and utilities.
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HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM
and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous
proteins. HHsearch is often used for protein structure prediction to detect
homologous templates and to build highly accurate query-template pairwise
alignments for homology modeling.
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HHblits can build high-quality MSAs starting from single sequences or from
MSAs. It transforms these into a query HMM and, using an iterative search
strategy, adds significantly similar sequences from the previous search to
the updated query HMM for the next search iteration. Compared to PSI-BLAST,
HHblits is faster, up to twice as sensitive and produces more accurate
alignments.
Description-md5: 33cb7e8c769908e574aec96cb70eb73a