How to Install and Uninstall jellyfish Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 22,2024

1. Install "jellyfish" package

Please follow the guidelines below to install jellyfish on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                jellyfish
            
                    
    
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2. Uninstall "jellyfish" package

Here is a brief guide to show you how to uninstall jellyfish on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                jellyfish
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the jellyfish package on Ubuntu 20.10 (Groovy Gorilla)

Package: jellyfish
Architecture: amd64
Version: 2.3.0-6
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 631
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libhts3 (>= 1.10), libjellyfish-2.0-2 (= 2.3.0-6), libstdc++6 (>= 9)
Filename: pool/universe/j/jellyfish/jellyfish_2.3.0-6_amd64.deb
Size: 360988
MD5sum: 6e514972b7f003b0a1a7afc3d1481e8e
SHA1: 3f4699febb5ea7516f7e0359a3fc2a5d3c36f604
SHA256: 947ad148aa08e3a0b88178015345324d1f9a785841440a358e97dcfaa85f5f75
SHA512: 0a8003569781745b89093511feed5f5636d9e6b9a4178df5b6d1c114880ce46dd9fcd47be20ab332e6de164e168cc532c297c3ab0c113e81b5359f38093bbb75
Homepage: https://www.cbcb.umd.edu/software/jellyfish/
Description-en: count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
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JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
Description-md5: 33c2d211a341ae9429c6f8ced355efd0