How to Install and Uninstall jellyfish Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 22,2024

1. Install "jellyfish" package

Please follow the steps below to install jellyfish on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                jellyfish
            
                    
    
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2. Uninstall "jellyfish" package

Please follow the instructions below to uninstall jellyfish on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                jellyfish
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the jellyfish package on Ubuntu 21.10 (Impish Indri)

Package: jellyfish
Architecture: amd64
Version: 2.3.0-10
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 2204
Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.3.1), libhts3 (>= 1.10), libjellyfish-2.0-2 (= 2.3.0-10), libstdc++6 (>= 9)
Breaks: jellyfish-examples (<< 2.3.0-7)
Replaces: jellyfish-examples (<< 2.3.0-7)
Filename: pool/universe/j/jellyfish/jellyfish_2.3.0-10_amd64.deb
Size: 714324
MD5sum: 554bdbbe4773e5caddc2517c9e0debcc
SHA1: 5ef19af7db567b2f7401a133caf1bb52d7191814
SHA256: 1e6b0fc9b5b911956b62e36a31266f4a6ab728c5039bba7210c89553fb982c4e
SHA512: e1c11e1b06948138325a9a7abe2555addbea6883c2e0c4af22f2a745415b861606fbf2a3a20a50debd2942553ef69d13170ddd8999883c76a8d683bba3cc3703
Homepage: https://www.cbcb.umd.edu/software/jellyfish/
Description-en: count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
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JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
Description-md5: 33c2d211a341ae9429c6f8ced355efd0