How to Install and Uninstall r-bioc-ensembldb Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: December 24,2024

1. Install "r-bioc-ensembldb" package

In this section, we are going to explain the necessary steps to install r-bioc-ensembldb on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                r-bioc-ensembldb
            
                    
    
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2. Uninstall "r-bioc-ensembldb" package

Learn how to uninstall r-bioc-ensembldb on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                r-bioc-ensembldb
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the r-bioc-ensembldb package on Ubuntu 20.10 (Groovy Gorilla)

Package: r-bioc-ensembldb
Architecture: all
Version: 2.12.1+dfsg-1build1
Priority: optional
Section: universe/gnu-r
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian R Packages Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 2343
Depends: r-base-core (>= 4.0.0.20200528-1), r-api-4.0, r-api-bioc-3.11, r-bioc-biocgenerics (>= 0.15.10), r-bioc-genomicranges (>= 1.31.18), r-bioc-genomicfeatures (>= 1.29.10), r-bioc-annotationfilter (>= 1.5.2), r-cran-rsqlite (>= 1.1), r-cran-dbi, r-bioc-biobase, r-bioc-genomeinfodb, r-bioc-annotationdbi (>= 1.31.19), r-bioc-rtracklayer, r-bioc-s4vectors (>= 0.23.10), r-bioc-rsamtools, r-bioc-iranges (>= 2.13.24), r-bioc-protgenerics, r-bioc-biostrings (>= 2.47.9), r-cran-curl
Suggests: r-cran-knitr, r-cran-testthat, r-bioc-gviz (>= 1.20.0), r-cran-magrittr, r-bioc-annotationhub
Filename: pool/universe/r/r-bioc-ensembldb/r-bioc-ensembldb_2.12.1+dfsg-1build1_all.deb
Size: 1499872
MD5sum: 38d6f8e048056a67af60a2696942bf40
SHA1: a4ac8e3943d9b3472fd0b565cfd16e27a0a30332
SHA256: 2ae6efe872d407257caaf2a798482a095f5baa1a366541e52090c2feec074990
SHA512: b9e5353098c8b55eeb520cdbfa9892660f642d5e914a39285e2c8b07c357daf5be5c6628155dc5752bc80ba33d369dd9de418d28315193ded8fe2e95467ae42b
Homepage: https://bioconductor.org/packages/ensembldb/
Description-en: GNU R utilities to create and use an Ensembl based annotation database
The package provides functions to create and use transcript centric
annotation databases/packages. The annotation for the databases are
directly fetched from Ensembl using their Perl API. The functionality
and data is similar to that of the TxDb packages from the
GenomicFeatures package, but, in addition to retrieve all
gene/transcript models and annotations from the database, the ensembldb
package provides also a filter framework allowing to retrieve
annotations for specific entries like genes encoded on a chromosome
region or transcript models of lincRNA genes.
Description-md5: 8193c0347bf158b238c1f1ab9ad7a963