How to Install and Uninstall r-bioc-ensembldb Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 26,2024

1. Install "r-bioc-ensembldb" package

This tutorial shows how to install r-bioc-ensembldb on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                r-bioc-ensembldb
            
                    
    
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2. Uninstall "r-bioc-ensembldb" package

Please follow the steps below to uninstall r-bioc-ensembldb on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                r-bioc-ensembldb
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the r-bioc-ensembldb package on Ubuntu 21.10 (Impish Indri)

Package: r-bioc-ensembldb
Architecture: all
Version: 2.14.0+dfsg-1
Priority: optional
Section: universe/gnu-r
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian R Packages Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 2345
Depends: r-base-core (>= 4.0.3-1), r-api-4.0, r-api-bioc-3.12, r-bioc-biocgenerics (>= 0.15.10), r-bioc-genomicranges (>= 1.31.18), r-bioc-genomicfeatures (>= 1.29.10), r-bioc-annotationfilter (>= 1.5.2), r-cran-rsqlite (>= 1.1), r-cran-dbi, r-bioc-biobase, r-bioc-genomeinfodb, r-bioc-annotationdbi (>= 1.31.19), r-bioc-rtracklayer, r-bioc-s4vectors (>= 0.23.10), r-bioc-rsamtools, r-bioc-iranges (>= 2.13.24), r-bioc-protgenerics, r-bioc-biostrings (>= 2.47.9), r-cran-curl
Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-testthat, r-bioc-gviz (>= 1.20.0), r-cran-magrittr, r-bioc-annotationhub
Filename: pool/universe/r/r-bioc-ensembldb/r-bioc-ensembldb_2.14.0+dfsg-1_all.deb
Size: 1501140
MD5sum: 1f9f055c7170d6f57e4f41ba08edc83b
SHA1: e3d8234af09fbfc6282f400633dd2f24ffe7d0e8
SHA256: 0c1b657395ca2d308ae03fc3c25879677ceff08060fcef375b81e6925d4775e6
SHA512: 53c80364f99f4e6fbf2f6e461c60ac4801e2eeb29b1f6c251c623ec350bf307a73ea444ef4be4b1961613040bea2fa070f9f44d8fab23f5a29c86fd29fd799ab
Homepage: https://bioconductor.org/packages/ensembldb/
Description-en: GNU R utilities to create and use an Ensembl based annotation database
The package provides functions to create and use transcript centric
annotation databases/packages. The annotation for the databases are
directly fetched from Ensembl using their Perl API. The functionality
and data is similar to that of the TxDb packages from the
GenomicFeatures package, but, in addition to retrieve all
gene/transcript models and annotations from the database, the ensembldb
package provides also a filter framework allowing to retrieve
annotations for specific entries like genes encoded on a chromosome
region or transcript models of lincRNA genes.
Description-md5: 8193c0347bf158b238c1f1ab9ad7a963