How to Install and Uninstall r-bioc-genomicfeatures Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: May 17,2024

1. Install "r-bioc-genomicfeatures" package

Please follow the steps below to install r-bioc-genomicfeatures on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                r-bioc-genomicfeatures
            
                    
    
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2. Uninstall "r-bioc-genomicfeatures" package

This tutorial shows how to uninstall r-bioc-genomicfeatures on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                r-bioc-genomicfeatures
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the r-bioc-genomicfeatures package on Ubuntu 20.10 (Groovy Gorilla)

Package: r-bioc-genomicfeatures
Architecture: all
Version: 1.40.1+dfsg-1
Priority: optional
Section: universe/gnu-r
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian R Packages Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 4632
Depends: r-base-core (>= 4.0.2-1), r-api-4.0, r-api-bioc-3.11, r-bioc-biocgenerics (>= 0.1.0), r-bioc-s4vectors (>= 0.17.29), r-bioc-iranges (>= 2.13.23), r-bioc-genomeinfodb (>= 1.23.10), r-bioc-genomicranges (>= 1.31.17), r-bioc-annotationdbi (>= 1.41.4), r-cran-dbi, r-cran-rsqlite (>= 2.0), r-cran-rcurl, r-bioc-xvector (>= 0.19.7), r-bioc-biostrings (>= 2.47.6), r-bioc-rtracklayer (>= 1.39.7), r-bioc-biomart (>= 2.17.1), r-bioc-biobase (>= 2.15.1)
Suggests: r-bioc-org.hs.eg.db, r-bioc-bsgenome, r-bioc-rsamtools, r-bioc-genomicalignments (>= 1.15.7), r-bioc-ensembldb, r-cran-runit, r-cran-knitr
Filename: pool/universe/r/r-bioc-genomicfeatures/r-bioc-genomicfeatures_1.40.1+dfsg-1_all.deb
Size: 1807628
MD5sum: f7af987a05a637c203e32541dc50c0fb
SHA1: 59d91e1523e87d0a3a4212424dc6fbf05b5deaff
SHA256: 403d5c4eedd0b2a2321b9dec8e05301ef9532951a183f115d8a3d8dafd64f2f7
SHA512: cf88bd5a14ca7c4bab4f18cbaac055306153e50c1f3e5472ffc40ac7b4c37849c4e10d2d20f68a0d540670940e93a51d49e41f42ebed325c002b475908e25ae2
Homepage: https://bioconductor.org/packages/GenomicFeatures/
Description-en: GNU R tools for making and manipulating transcript centric annotations
A set of tools and methods for making and manipulating transcript
centric annotations. With these tools the user can easily download the
genomic locations of the transcripts, exons and cds of a given organism,
from either the UCSC Genome Browser or a BioMart database (more sources
will be supported in the future). This information is then stored in a
local database that keeps track of the relationship between transcripts,
exons, cds and genes. Flexible methods are provided for extracting the
desired features in a convenient format.
Description-md5: d534bd4faeaf5a9823825797ab564bb0