How to Install and Uninstall fastml Package on Ubuntu 21.04 (Hirsute Hippo)

Last updated: November 22,2024

1. Install "fastml" package

This guide let you learn how to install fastml on Ubuntu 21.04 (Hirsute Hippo)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                fastml
            
                    
    
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2. Uninstall "fastml" package

This guide covers the steps necessary to uninstall fastml on Ubuntu 21.04 (Hirsute Hippo):


    
        
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                sudo apt remove
            
                        
                fastml
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the fastml package on Ubuntu 21.04 (Hirsute Hippo)

Package: fastml
Architecture: amd64
Version: 3.11-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 3438
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2)
Filename: pool/universe/f/fastml/fastml_3.11-3_amd64.deb
Size: 926320
MD5sum: 4f54b36fb36cf15fd5058318ed73ac70
SHA1: f55a7f8dd81caa553b86521551202ed45c0030d5
SHA256: 89a9c2c6c3286905aba6d799eb30df134a2f7502251fbbc23e2060a23d969f04
SHA512: d0b8e78d98993b3205106ff64dddcbfd73c70f2c2d522c705f0e601d2fbf0356ef2434c03122408346fe9ccd08e296c6d444888350702631c2ff79ca83af4ad2
Homepage: http://fastml.tau.ac.il/
Description-en: maximum likelihood ancestral amino-acid sequence reconstruction
FastML is a bioinformatics tool for the reconstruction of ancestral
sequences based on the phylogenetic relations between homologous
sequences. FastML runs several algorithms that reconstruct the ancestral
sequences with emphasis on an accurate reconstruction of both indels and
characters. For character reconstruction the previously described FastML
algorithms are used to efficiently infer the most likely ancestral
sequences for each internal node of the tree. Both joint and the
marginal reconstructions are provided. For indels reconstruction the
sequences are first coded according to the indel events detected within
the multiple sequence alignment (MSA) and then a state-of-the-art
likelihood model is used to reconstruct ancestral indels states. The
results are the most probable sequences, together with posterior
probabilities for each character and indel at each sequence position for
each internal node of the tree. FastML is generic and is applicable for
any type of molecular sequences (nucleotide, protein, or codon
sequences).
Description-md5: 92de131cd4b319687b7cc386f50bb894