How to Install and Uninstall fastml Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: November 22,2024

1. Install "fastml" package

Please follow the steps below to install fastml on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                fastml
            
                    
    
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2. Uninstall "fastml" package

This guide covers the steps necessary to uninstall fastml on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                fastml
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the fastml package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: fastml
Priority: optional
Section: universe/science
Installed-Size: 3652
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Version: 3.1-2
Depends: libc6 (>= 2.14), libgcc1 (>= 1:4.0), libstdc++6 (>= 5.2)
Filename: pool/universe/f/fastml/fastml_3.1-2_amd64.deb
Size: 938248
MD5sum: 746740ea4849967197b226ba9e91f94a
SHA1: 4e5240ae1605ee9cec8777b356690a528e57c946
SHA256: 95881da91c4abe05eec1b992aac96626afa86b183dc5231eac3c941dbceede98
Description-en: maximum likelihood ancestral amino-acid sequence reconstruction
FastML is a bioinformatics tool for the reconstruction of ancestral
sequences based on the phylogenetic relations between homologous
sequences. FastML runs several algorithms that reconstruct the ancestral
sequences with emphasis on an accurate reconstruction of both indels and
characters. For character reconstruction the previously described FastML
algorithms are used to efficiently infer the most likely ancestral
sequences for each internal node of the tree. Both joint and the
marginal reconstructions are provided. For indels reconstruction the
sequences are first coded according to the indel events detected within
the multiple sequence alignment (MSA) and then a state-of-the-art
likelihood model is used to reconstruct ancestral indels states. The
results are the most probable sequences, together with posterior
probabilities for each character and indel at each sequence position for
each internal node of the tree. FastML is generic and is applicable for
any type of molecular sequences (nucleotide, protein, or codon
sequences).
Description-md5: 92de131cd4b319687b7cc386f50bb894
Homepage: http://fastml.tau.ac.il/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu