How to Install and Uninstall fastml Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 25,2024

1. Install "fastml" package

Please follow the guidance below to install fastml on Ubuntu 20.10 (Groovy Gorilla)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                fastml
            
                    
    
    Copied

2. Uninstall "fastml" package

This tutorial shows how to uninstall fastml on Ubuntu 20.10 (Groovy Gorilla):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                fastml
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the fastml package on Ubuntu 20.10 (Groovy Gorilla)

Package: fastml
Architecture: amd64
Version: 3.11-2build1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 3446
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2)
Filename: pool/universe/f/fastml/fastml_3.11-2build1_amd64.deb
Size: 933624
MD5sum: 01b601d1eb022cbb2a15b2ebfdc8edc5
SHA1: 46066e751f0d4cc4e8b087251937b7954407348a
SHA256: c42058244565637b1f9ad4aff64eab7e2e01ab4ae7e29fd2b75ca6a4394ed626
SHA512: f2a47a656d34253587f55272a99dbc1dd65f639be81a49fbbb3ac50e17e18807254fd077ff4bd463d75d9b282dcc2012bdf60867e8cacfd6e430eee53f485fee
Homepage: http://fastml.tau.ac.il/
Description-en: maximum likelihood ancestral amino-acid sequence reconstruction
FastML is a bioinformatics tool for the reconstruction of ancestral
sequences based on the phylogenetic relations between homologous
sequences. FastML runs several algorithms that reconstruct the ancestral
sequences with emphasis on an accurate reconstruction of both indels and
characters. For character reconstruction the previously described FastML
algorithms are used to efficiently infer the most likely ancestral
sequences for each internal node of the tree. Both joint and the
marginal reconstructions are provided. For indels reconstruction the
sequences are first coded according to the indel events detected within
the multiple sequence alignment (MSA) and then a state-of-the-art
likelihood model is used to reconstruct ancestral indels states. The
results are the most probable sequences, together with posterior
probabilities for each character and indel at each sequence position for
each internal node of the tree. FastML is generic and is applicable for
any type of molecular sequences (nucleotide, protein, or codon
sequences).
Description-md5: 92de131cd4b319687b7cc386f50bb894