How to Install and Uninstall ivar Package on Ubuntu 21.04 (Hirsute Hippo)

Last updated: May 19,2024

1. Install "ivar" package

Please follow the steps below to install ivar on Ubuntu 21.04 (Hirsute Hippo)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                ivar
            
                    
    
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2. Uninstall "ivar" package

This guide covers the steps necessary to uninstall ivar on Ubuntu 21.04 (Hirsute Hippo):


    
        
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                sudo apt remove
            
                        
                ivar
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the ivar package on Ubuntu 21.04 (Hirsute Hippo)

Package: ivar
Architecture: amd64
Version: 1.3+dfsg-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1650
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libhts3 (>= 1.10), libstdc++6 (>= 9)
Recommends: samtools
Filename: pool/universe/i/ivar/ivar_1.3+dfsg-1_amd64.deb
Size: 211084
MD5sum: 564cb88f8eefa5ecad4b7496746a0881
SHA1: edb9cb0406e1b53a0d81472513d357f14842f6a7
SHA256: 492a095731fb259188e239c737fa6f3455088a5d6c0180228e8bde55f9b4d495
SHA512: 020399980a5889e355ec4300afb92150e5d86a0d4825069d514e5f06d84ae6631ddbcdc0ebd3dced3c7dc92ddc4da8e7185f839ca39fa1c81b3d823113ac1166
Homepage: https://github.com/andersen-lab/ivar
Description-en: functions broadly useful for viral amplicon-based sequencing
iVar is a computational package that contains functions broadly useful
for viral amplicon-based sequencing. Additional tools for metagenomic
sequencing are actively being incorporated into iVar. While each of
these functions can be accomplished using existing tools, iVar contains
an intersection of functionality from multiple tools that are required
to call iSNVs and consensus sequences from viral sequencing data across
multiple replicates. iVar provided the following functions:
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1. trimming of primers and low-quality bases,
2. consensus calling,
3. variant calling - both iSNVs and insertions/deletions, and
4. identifying mismatches to primer sequences and excluding the
corresponding reads from alignment files.
Description-md5: 0e23cb2ef34819e99960031f64b21c00