How to Install and Uninstall r-bioc-deseq2 Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 10,2024

1. Install "r-bioc-deseq2" package

Please follow the guidance below to install r-bioc-deseq2 on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                r-bioc-deseq2
            
                    
    
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2. Uninstall "r-bioc-deseq2" package

This tutorial shows how to uninstall r-bioc-deseq2 on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                r-bioc-deseq2
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the r-bioc-deseq2 package on Ubuntu 21.10 (Impish Indri)

Package: r-bioc-deseq2
Architecture: amd64
Version: 1.30.1+dfsg-1
Priority: optional
Section: universe/gnu-r
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian R Packages Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1954
Depends: r-base-core (>= 4.0.4-1build1), r-api-4.0, r-api-bioc-3.12, r-bioc-s4vectors (>= 0.23.18), r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment (>= 1.1.6), r-bioc-biocgenerics (>= 0.7.5), r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-cran-locfit, r-bioc-geneplotter, r-cran-ggplot2, r-cran-rcpp (>= 0.11.0), r-cran-rcpparmadillo, libblas3 | libblas.so.3, libc6 (>= 2.29), libgcc-s1 (>= 3.0), liblapack3 | liblapack.so.3, libstdc++6 (>= 9)
Recommends: r-cran-testthat, r-bioc-glmgampoi, r-bioc-tximport
Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-pheatmap, r-cran-rcolorbrewer, r-cran-readr, r-cran-pbapply, r-cran-biocmanager
Filename: pool/universe/r/r-bioc-deseq2/r-bioc-deseq2_1.30.1+dfsg-1_amd64.deb
Size: 1252612
MD5sum: 40460c7a7e77b17534b506a98b351da8
SHA1: a029b714279ee7f2b64d3f73ccab3cae13d70969
SHA256: 5e6515247e6a5b413632607bb7c021f271b797a67f5f119fe3e5b658e6ca27b4
SHA512: 0304c4ed1e95ff9b99a989f7a6e4b79f6aa380fe67e5ff8ab54c0ded569e7a6df0391218077b4c44de3e6caf513390b96339aedf6bbe5b285eb90e46e2ce9e59
Homepage: https://bioconductor.org/packages/DESeq2/
Description-en: R package for RNA-Seq Differential Expression Analysis
Differential gene expression analysis based on the negative binomial
distribution. Estimate variance-mean dependence in count data from
high-throughput sequencing assays and test for differential expression based
on a model using the negative binomial distribution.
Description-md5: ae9e1d3c5793b8ca7b76c769e1059db8