How to Install and Uninstall lumpy-sv Package on Debian 12 (Bookworm)

Last updated: May 20,2024

You can also install and uninstall the lumpy-sv on the following distributions in the same way, as they are all based on the Debian system

MX Linux 23
SparkyLinux

1. Install "lumpy-sv" package

This is a short guide on how to install lumpy-sv on Debian 12 (Bookworm)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                lumpy-sv
            
                    
    
    Copied

2. Uninstall "lumpy-sv" package

In this section, we are going to explain the necessary steps to uninstall lumpy-sv on Debian 12 (Bookworm):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                lumpy-sv
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the lumpy-sv package on Debian 12 (Bookworm)

Package: lumpy-sv
Version: 0.3.1+dfsg-7
Installed-Size: 656
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libbamtools2.5.2 (>= 2.5.2+dfsg), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libgzstream0 (>= 1.5+dfsg), libhts3 (>= 1.10), libstdc++6 (>= 11), python3:any, samblaster, samtools, python3, python3-pysam, python3-numpy, bamkit
Recommends: sambamba
Description: general probabilistic framework for structural variant discovery
Description-md5: 815516aa8931beee4eee9025a0f06630
Homepage: https://github.com/arq5x/lumpy-sv
Section: science
Priority: optional
Filename: pool/main/l/lumpy-sv/lumpy-sv_0.3.1+dfsg-7_amd64.deb
Size: 195296
MD5sum: 5c108858449885d7c752f2f8f64194ea
SHA256: 58de2a437b6a9ece539737b73f9bfe84c4a41380357952980a53224701f3a857