Complete Guide: Installing lumpy-sv on Ubuntu 21.10 (Impish Indri) 2024

1. Install "lumpy-sv" package

This guide covers the steps necessary to install lumpy-sv on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                lumpy-sv
            
                    
    
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2. Uninstall "lumpy-sv" package

This tutorial shows how to uninstall lumpy-sv on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                lumpy-sv
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the lumpy-sv package on Ubuntu 21.10 (Impish Indri)

Package: lumpy-sv
Architecture: amd64
Version: 0.3.1+dfsg-5
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 647
Depends: libbamtools2.5.1 (>= 2.5.1+dfsg), libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgzstream0 (>= 1.5+dfsg), libhts3 (>= 1.10), libstdc++6 (>= 9), python3:any, samblaster, samtools, python3, python3-pysam, python3-numpy, bamkit
Recommends: sambamba
Filename: pool/universe/l/lumpy-sv/lumpy-sv_0.3.1+dfsg-5_amd64.deb
Size: 187628
MD5sum: ad3ddc13179df5b04d615189d26c906b
SHA1: ea4f66e03b859f6087bf366c307ae9a80214a447
SHA256: 95f07dca49ad6b28bc338c502465a58e1654d0e2a597d450177b055e631b0d56
SHA512: e20fda66ccbe60f9981d2a65044ec86f46a7336abdad0abd0ffbb32c4c196aa7089931ab6fc549b1a4b4deab2734737525695eb65e8727191a9b36b8b06a66d6
Homepage: https://github.com/arq5x/lumpy-sv
Description-en: general probabilistic framework for structural variant discovery
LUMPY, a novel SV discovery framework that naturally integrates multiple
SV signals jointly across multiple samples. LUMPY yields improved
sensitivity, especially when SV signal is reduced owing to either low
coverage data or low intra-sample variant allele frequency.
Description-md5: 815516aa8931beee4eee9025a0f06630