How to Install and Uninstall gubbins Package on Kali Linux

Last updated: November 22,2024

1. Install "gubbins" package

Learn how to install gubbins on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                gubbins
            
                    
    
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2. Uninstall "gubbins" package

This tutorial shows how to uninstall gubbins on Kali Linux:


    
        
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                sudo apt remove
            
                        
                gubbins
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the gubbins package on Kali Linux

Package: gubbins
Version: 3.3.3-1
Installed-Size: 474
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.34), zlib1g (>= 1:1.1.4), python3-biopython, python3-dendropy, python3-multiprocess, python3-numpy, python3-scipy, python3:any, python3, raxml
Recommends: iqtree, fasttree, python3-numba
Suggests: r-base-core
Size: 91532
SHA256: 5d289fdfc813da005f8bc3a9984db470a0688ec36eee897a7b3b2e6baf73672d
SHA1: 2de4fb0e4c3ab389e31b515f7fbe33ae4ff34dbc
MD5sum: cd84769884cc98955af7a79ebc9c0b9f
Description: phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of
recombinant bacterial whole genome sequences.
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Gubbins (Genealogies Unbiased By recomBinations In Nucleotide
Sequences) is an algorithm that iteratively identifies loci containing
elevated densities of base substitutions while concurrently constructing
a phylogeny based on the putative point mutations outside of these
regions. Simulations demonstrate the algorithm generates highly accurate
reconstructions under realistic models of short-term bacterial
evolution, and can be run in only a few hours on alignments of hundreds
of bacterial genome sequences.
Description-md5:
Homepage: https://sanger-pathogens.github.io/gubbins/
Section: science
Priority: optional
Filename: pool/main/g/gubbins/gubbins_3.3.3-1_amd64.deb