How to Install and Uninstall gubbins Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: November 22,2024

1. Install "gubbins" package

Learn how to install gubbins on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                gubbins
            
                    
    
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2. Uninstall "gubbins" package

Please follow the step by step instructions below to uninstall gubbins on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                gubbins
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the gubbins package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: gubbins
Priority: optional
Section: universe/science
Installed-Size: 190
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Version: 1.4.5-1
Depends: libc6 (>= 2.14), zlib1g (>= 1:1.1.4), python3-biopython, python3-dendropy, python3-nose, python3-reportlab, python3:any (>= 3.3.2-2~), python3, fastml, fasttree, raxml
Filename: pool/universe/g/gubbins/gubbins_1.4.5-1_amd64.deb
Size: 48730
MD5sum: e31cfafb87008edc145408e139cd3bb3
SHA1: e576d29df94db47c379d01b55f4600cf3907d936
SHA256: 47a1270be1192dbd869e3fc0fd2253164cd859415144f3d34315331fa4e568d6
Description-en: phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of
recombinant bacterial whole genome sequences.
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Gubbins (Genealogies Unbiased By recomBinations In Nucleotide
Sequences) is an algorithm that iteratively identifies loci containing
elevated densities of base substitutions while concurrently constructing
a phylogeny based on the putative point mutations outside of these
regions. Simulations demonstrate the algorithm generates highly accurate
reconstructions under realistic models of short-term bacterial
evolution, and can be run in only a few hours on alignments of hundreds
of bacterial genome sequences.
Description-md5: cc258d495d1b902fa507e53b5cc3902e
Homepage: https://sanger-pathogens.github.io/gubbins/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu