How to Install and Uninstall gubbins Package on Ubuntu 21.10 (Impish Indri)

Last updated: December 25,2024

1. Install "gubbins" package

Here is a brief guide to show you how to install gubbins on Ubuntu 21.10 (Impish Indri)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                gubbins
            
                    
    
    Copied

2. Uninstall "gubbins" package

Please follow the guidelines below to uninstall gubbins on Ubuntu 21.10 (Impish Indri):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                gubbins
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the gubbins package on Ubuntu 21.10 (Impish Indri)

Package: gubbins
Architecture: amd64
Version: 2.4.1-4
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 225
Depends: libc6 (>= 2.29), zlib1g (>= 1:1.1.4), python3-biopython, python3-dendropy, python3:any, python3, raxml
Recommends: iqtree, fasttree
Filename: pool/universe/g/gubbins/gubbins_2.4.1-4_amd64.deb
Size: 49768
MD5sum: 9be48c4ae6f64ed71e7d0a5dd445bf5c
SHA1: 6092140ffdc324b1ed934ca732e50c7ffb8134c7
SHA256: 4fd6ac250d31877e1dc12129ab41f7f1313b1d538f42ed2190efc4509eafa80a
SHA512: 242e458f01818150416512c7084b34d6023d159674096d5f87060a9799650122b0ee7df4588d43b2c3401edbfa2f5b367521e3f7366a66a6c722beeac53c48c2
Homepage: https://sanger-pathogens.github.io/gubbins/
Description-en: phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of
recombinant bacterial whole genome sequences.
.
Gubbins (Genealogies Unbiased By recomBinations In Nucleotide
Sequences) is an algorithm that iteratively identifies loci containing
elevated densities of base substitutions while concurrently constructing
a phylogeny based on the putative point mutations outside of these
regions. Simulations demonstrate the algorithm generates highly accurate
reconstructions under realistic models of short-term bacterial
evolution, and can be run in only a few hours on alignments of hundreds
of bacterial genome sequences.
Description-md5: cc258d495d1b902fa507e53b5cc3902e