How to Install and Uninstall gubbins Package on Ubuntu 21.04 (Hirsute Hippo)

Last updated: November 22,2024

1. Install "gubbins" package

Please follow the guidance below to install gubbins on Ubuntu 21.04 (Hirsute Hippo)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                gubbins
            
                    
    
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2. Uninstall "gubbins" package

Please follow the guidance below to uninstall gubbins on Ubuntu 21.04 (Hirsute Hippo):


    
        
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                sudo apt remove
            
                        
                gubbins
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the gubbins package on Ubuntu 21.04 (Hirsute Hippo)

Package: gubbins
Architecture: amd64
Version: 2.4.1-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 225
Depends: libc6 (>= 2.29), zlib1g (>= 1:1.1.4), python3-biopython, python3-dendropy, python3:any, python3, raxml
Recommends: iqtree, fasttree
Filename: pool/universe/g/gubbins/gubbins_2.4.1-3_amd64.deb
Size: 50744
MD5sum: 927ec41b203ced5d97743b5e549a768a
SHA1: f9f8b6f0adf8192091325de81ddbfea6fde88294
SHA256: 8ab9274ee53c3e74e0db396bb75d652c42fae02e1c4184d95fa110bc31c74906
SHA512: 841a6f1407a2d9c154dd36cac961747387c2a7484e14ea4be3e1ebfa6e82a051afad0dbb6dc39dad68722d585d6c853aa9e3c91cad20a82957c0285c61cd8b89
Homepage: https://sanger-pathogens.github.io/gubbins/
Description-en: phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of
recombinant bacterial whole genome sequences.
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Gubbins (Genealogies Unbiased By recomBinations In Nucleotide
Sequences) is an algorithm that iteratively identifies loci containing
elevated densities of base substitutions while concurrently constructing
a phylogeny based on the putative point mutations outside of these
regions. Simulations demonstrate the algorithm generates highly accurate
reconstructions under realistic models of short-term bacterial
evolution, and can be run in only a few hours on alignments of hundreds
of bacterial genome sequences.
Description-md5: cc258d495d1b902fa507e53b5cc3902e