How to Install and Uninstall gubbins Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 22,2024

1. Install "gubbins" package

Please follow the guidance below to install gubbins on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                gubbins
            
                    
    
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2. Uninstall "gubbins" package

This is a short guide on how to uninstall gubbins on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                gubbins
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the gubbins package on Ubuntu 20.10 (Groovy Gorilla)

Package: gubbins
Architecture: amd64
Version: 2.4.1-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 225
Depends: libc6 (>= 2.29), zlib1g (>= 1:1.1.4), python3-biopython, python3-dendropy, python3:any, python3, raxml
Recommends: iqtree, fasttree
Filename: pool/universe/g/gubbins/gubbins_2.4.1-2_amd64.deb
Size: 50408
MD5sum: 59dce656ef4bd322ba027c5565f9db24
SHA1: 02e7436f55de827f837e2d8acd09cf0e527e27ab
SHA256: 2309f23b64d373a614f37f199b4dc238a2b3ed80717a9453f66e7d7842b3c159
SHA512: 7142f8003ca2d987a83cff6700cadd65ef16ddfe1408f1f19a01570df2e4f339ee829b2260563789f3e3df0219663cd7101537e05b03572919f10fcebc436412
Homepage: https://sanger-pathogens.github.io/gubbins/
Description-en: phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of
recombinant bacterial whole genome sequences.
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Gubbins (Genealogies Unbiased By recomBinations In Nucleotide
Sequences) is an algorithm that iteratively identifies loci containing
elevated densities of base substitutions while concurrently constructing
a phylogeny based on the putative point mutations outside of these
regions. Simulations demonstrate the algorithm generates highly accurate
reconstructions under realistic models of short-term bacterial
evolution, and can be run in only a few hours on alignments of hundreds
of bacterial genome sequences.
Description-md5: cc258d495d1b902fa507e53b5cc3902e