How to Install and Uninstall spades Package on Kali Linux

Last updated: November 22,2024

1. Install "spades" package

This tutorial shows how to install spades on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                spades
            
                    
    
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2. Uninstall "spades" package

This guide covers the steps necessary to uninstall spades on Kali Linux:


    
        
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                sudo apt remove
            
                        
                spades
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the spades package on Kali Linux

Package: spades
Version: 3.15.5+dfsg-7
Installed-Size: 38720
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.34), libgcc-s1 (>= 4.0), libgomp1 (>= 6), libnlopt0 (>= 2.6.1), libssw0 (>= 1.1), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.3.3), python3:any, python3, python3-joblib, python3-packaging, python3-yaml, bwa, bamtools, samtools
Size: 9019980
SHA256: 217dc4ffc193da377c6af55f155f1eb7bde8393e7b8bc6857172f86089b7a118
SHA1: 627138ab7e9113d9d7ff55570cfc53d8d52d4b42
MD5sum: 4df634c754bc0623d4572795717bc376
Description: genome assembler for single-cell and isolates data sets
The SPAdes – St. Petersburg genome assembler is intended for both
standard isolates and single-cell MDA bacteria assemblies. It works
with Illumina or IonTorrent reads and is capable of providing hybrid
assemblies using PacBio and Sanger reads. You can also provide
additional contigs that will be used as long reads.
.
This package provides the following additional pipelines:
* metaSPAdes – a pipeline for metagenomic data sets
* plasmidSPAdes – a pipeline for extracting and assembling plasmids
from WGS data sets
* metaplasmidSPAdes – a pipeline for extracting and assembling
plasmids from metagenomic data sets
* rnaSPAdes – a de novo transcriptome assembler from RNA-Seq data
* truSPAdes – a module for TruSeq barcode assembly
* biosyntheticSPAdes – a module for biosynthetic gene cluster
assembly with paired-end reads
.
SPAdes provides several stand-alone binaries with relatively simple
command-line interface: k-mer counting (spades-kmercounter), assembly
graph construction (spades-gbuilder) and long read to graph aligner
(spades-gmapper).
Description-md5:
Homepage: http://cab.spbu.ru/software/spades/
Tag: biology::nucleic-acids, field::biology, field::biology:bioinformatics,
implemented-in::c++, implemented-in::python, interface::commandline,
role::program, scope::utility, works-with::biological-sequence,
works-with::file
Section: science
Priority: optional
Filename: pool/main/s/spades/spades_3.15.5+dfsg-7_amd64.deb