How to Install and Uninstall cnvkit Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 22,2024

1. Install "cnvkit" package

In this section, we are going to explain the necessary steps to install cnvkit on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                cnvkit
            
                    
    
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2. Uninstall "cnvkit" package

Learn how to uninstall cnvkit on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                cnvkit
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the cnvkit package on Ubuntu 20.10 (Groovy Gorilla)

Package: cnvkit
Architecture: amd64
Version: 0.9.7-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 69054
Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-pomegranate, python3-pyfaidx, python3-pysam, python3-reportlab, python3-scipy, python3-sklearn, python3:any, r-bioc-dnacopy
Filename: pool/universe/c/cnvkit/cnvkit_0.9.7-1_amd64.deb
Size: 15424880
MD5sum: d2cf07322a0fb352cf3ed220992071aa
SHA1: 1c37cbfcc95f35a95bbfb4d29a6936e83c527c29
SHA256: 25a85d088d1f83dd88fa071e765aaef0d56377a60d4a467721bf7662410eb06a
SHA512: d34c03cb81151c93975030f7f9dede2ee98e7ec59218abeac1b3a125bc2485c660a119d90743d4daaa6a7391cefbca8abd65cd7640c4e53bdeeb264221468102
Homepage: http://cnvkit.readthedocs.org
Description-en: Copy number variant detection from targeted DNA sequencing
A command-line toolkit and Python library for detecting copy number variants
and alterations genome-wide from targeted DNA sequencing. It is designed for
use with hybrid capture, including both whole-exome and custom target panels,
and short-read sequencing platforms such as Illumina and Ion Torrent.
Description-md5: 0b8ab5ba6be9de3379277ab7a92a7b5d